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The map label for this gene is yqgF [C]

Identifier: 77461533

GI number: 77461533

Start: 5977462

End: 5977899

Strand: Direct

Name: yqgF [C]

Synonym: Pfl01_5312

Alternate gene names: 77461533

Gene position: 5977462-5977899 (Clockwise)

Preceding gene: 77461532

Following gene: 77461534

Centisome position: 92.84

GC content: 62.56

Gene sequence:

>438_bases
ATGGCCCTGCGCCTGATCCTCGGCTTCGACTACGGCACCAAACAGATCGGCGTGGCGGTCGGCCAGGTGATTACCGGCCA
GGCCCGCGAACTGTGCACCTTGAAGGCGCAGAACGGTGTACCGGACTGGAATCAGGTCGAAGCCCTGATAAAGGAATGGA
AACCCGACGCCGTGGTGGTCGGCCTGCCCCTGAACATGGACGGTACGCCCAGCGAGATGTGCGCCCGCGCCGAGAAATTC
GCCCGTCGCCTCAATGGCCGCTTCAACCTGCCTTTCTATACCCACGACGAACGCCTGACGACCTTCGAAGCCAAGGGCGA
ACGACTGGTGCGCGGCGGACAGAAAGGCAGCTACCGCGATAACCCGGTGGACGCCATCGCCGCCGCCCTGCTGTTGCAAG
GCTGGCTCGACGAAAACACCGCACTATTTGAATCCTGA

Upstream 100 bases:

>100_bases
ACATCCTGTTCAACACCAGCAGTGAACTGCGCCTGGAAGCGGCGGCCAGGCACCTGGGGATCAACCTCAGCCTGCTGACC
AGCCAGGCAGGACACGCCTG

Downstream 100 bases:

>100_bases
CAAGCGCTACGGCGCTTTTCTTTTGGTTACAACCCGAGCCCCGGTTCGCGAGAACCGGCTCGACCCCGAGAAGGAGCAAC
CATGAGCCTGCCCAATCCCG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MALRLILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLNMDGTPSEMCARAEKF
ARRLNGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVDAIAAALLLQGWLDENTALFES

Sequences:

>Translated_145_residues
MALRLILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLNMDGTPSEMCARAEKF
ARRLNGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVDAIAAALLLQGWLDENTALFES
>Mature_144_residues
ALRLILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVVGLPLNMDGTPSEMCARAEKFA
RRLNGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRDNPVDAIAAALLLQGWLDENTALFES

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=51.1278195488722, Blast_Score=145, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 16052; Mature: 15920

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRLILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVV
CEEEEEEECCCCCHHHHHHHHHHHCCCCHHHEEEECCCCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTPSEMCARAEKFARRLNGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRD
EEECCCCCCHHHHHHHHHHHHHHHCCEECCCEEECCCCEEEECCCCHHHHCCCCCCCCCC
NPVDAIAAALLLQGWLDENTALFES
CHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ALRLILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALIKEWKPDAVVV
EEEEEEECCCCCHHHHHHHHHHHCCCCHHHEEEECCCCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTPSEMCARAEKFARRLNGRFNLPFYTHDERLTTFEAKGERLVRGGQKGSYRD
EEECCCCCCHHHHHHHHHHHHHHHCCEECCCEEECCCCEEEECCCCHHHHCCCCCCCCCC
NPVDAIAAALLLQGWLDENTALFES
CHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA