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The map label for this gene is glxA [H]

Identifier: 77461457

GI number: 77461457

Start: 5890775

End: 5891878

Strand: Reverse

Name: glxA [H]

Synonym: Pfl01_5236

Alternate gene names: 77461457

Gene position: 5891878-5890775 (Counterclockwise)

Preceding gene: 77461458

Following gene: 77461450

Centisome position: 91.51

GC content: 63.86

Gene sequence:

>1104_bases
ATGACGTCGTTCAACTCCGGGGCTCAACCCCAGAACCGTGCGCCTCAATCCATCGGCTTTCTGCTGCTGGACAATTTCAC
GCTGATTTCCCTGGCTTCCGCAGTCGAACCCCTGCGCATGGCCAACCAGTTGTCCGGTCGCGAGCTGTATCGCTGGACCA
CCCTCACCGTTGATGGCGGCCAGGTCTGGGCCAGTGACGGTCTGCAGATCACCCCCGACGCCTCCATGCACAAAGCCCCG
GCCCTCGACACCGTCATCGTGTGCGGCGGGATCGGCATTCAGCGCACTGTTACCCGTGAACACGTCTCGTGGCTGCAAAG
CCAGGCGCGTCAGTCACGCCGCCTCGGTGCCGTGTGCACCGGCAGTTGGGCCCTGGCCTGCGCCGGCCTGCTCGACGGCT
TCGATTGCAGCGTGCACTGGGAATGTCTGGCGGCGATGCAGGAAGCTTTCCCGCGTGTTGCGATGAGCACCCGCCTGTTT
ACCCTCGACCGTAACCGTTTCACCAGCTCCGGCGGCACCGCGCCGCTGGACATGATGCTGCACCTGATCAGCCGCGATCA
CGGCCGTGAACTGTCCGCCGCGATCTCGGAAATGTTCGTCTACGAACGCATCCGCAACGAGCAGGATCACCAGCGTGTCC
CGCTCAAGCACATGCTCGGCACCAACCAGCCGAAACTGCAGGAAATCGTTGCGCTGATGGAAGCCAACCTGGAAGAGCCG
ATCGACCTCGACGAACTGGCGGTGTACGTCGCCGTGTCCCGTCGCCAGCTCGAGCGCCTGTTCCAGAAATACCTGCACTG
CTCGCCGTCGCGCTACTACCTCAAGCTGCGCCTGATCCGTGCGCGGCAACTGCTCAAGCAGACGCCGATGTCGATCATCG
AAGTGGCGTCGGTCTGCGGCTTCGTGTCGACACCGCACTTCTCCAAGTGCTACCGCGAATACTTCGGCATTCCGCCGCGT
GACGAGCGCGTCGGCTCCAACACCACCCAGCAGGTGGCGATGATGCCGCTGCCGCAGGCCATCGTGATGTCGCCGCTGTC
CGGGCCGATGTCGGCGCTGAGCCAGGCACGCAACGAGTCGACCTTCGCCAGCGTGCGCCTCTAA

Upstream 100 bases:

>100_bases
TGCTCTGTCATAACAAAGCCCGTCTCACGCAAGAGAACGATGGCAATAACAAGAGCCTCCGCCTGAGGCCATCACCCGCT
TTGTGTGAGGAGATACCGCG

Downstream 100 bases:

>100_bases
AACGAAAGATCGCAGCCTGCGACAGCGCCTTCAGGAAAGGCACTGTCGCAGGCTGCGATCTTTTTTTGTCAGGTTTCAGG
CGCGGGTTTGCTGATACTGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTSFNSGAQPQNRAPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWTTLTVDGGQVWASDGLQITPDASMHKAP
ALDTVIVCGGIGIQRTVTREHVSWLQSQARQSRRLGAVCTGSWALACAGLLDGFDCSVHWECLAAMQEAFPRVAMSTRLF
TLDRNRFTSSGGTAPLDMMLHLISRDHGRELSAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEP
IDLDELAVYVAVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIPPR
DERVGSNTTQQVAMMPLPQAIVMSPLSGPMSALSQARNESTFASVRL

Sequences:

>Translated_367_residues
MTSFNSGAQPQNRAPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWTTLTVDGGQVWASDGLQITPDASMHKAP
ALDTVIVCGGIGIQRTVTREHVSWLQSQARQSRRLGAVCTGSWALACAGLLDGFDCSVHWECLAAMQEAFPRVAMSTRLF
TLDRNRFTSSGGTAPLDMMLHLISRDHGRELSAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEP
IDLDELAVYVAVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIPPR
DERVGSNTTQQVAMMPLPQAIVMSPLSGPMSALSQARNESTFASVRL
>Mature_366_residues
TSFNSGAQPQNRAPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWTTLTVDGGQVWASDGLQITPDASMHKAPA
LDTVIVCGGIGIQRTVTREHVSWLQSQARQSRRLGAVCTGSWALACAGLLDGFDCSVHWECLAAMQEAFPRVAMSTRLFT
LDRNRFTSSGGTAPLDMMLHLISRDHGRELSAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEPI
DLDELAVYVAVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIPPRD
ERVGSNTTQQVAMMPLPQAIVMSPLSGPMSALSQARNESTFASVRL

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=113, Percent_Identity=31.858407079646, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI226510985, Length=125, Percent_Identity=32.8, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40988; Mature: 40857

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSFNSGAQPQNRAPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWTTLTVDGG
CCCCCCCCCCCCCCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECC
QVWASDGLQITPDASMHKAPALDTVIVCGGIGIQRTVTREHVSWLQSQARQSRRLGAVCT
EEEECCCCEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEC
GSWALACAGLLDGFDCSVHWECLAAMQEAFPRVAMSTRLFTLDRNRFTSSGGTAPLDMML
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHH
HLISRDHGRELSAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEP
HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCCC
IDLDELAVYVAVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FVSTPHFSKCYREYFGIPPRDERVGSNTTQQVAMMPLPQAIVMSPLSGPMSALSQARNES
CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHEEECCCCHHHHHCCCCCHHHHHHHHHCCC
TFASVRL
CHHEECC
>Mature Secondary Structure 
TSFNSGAQPQNRAPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWTTLTVDGG
CCCCCCCCCCCCCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECC
QVWASDGLQITPDASMHKAPALDTVIVCGGIGIQRTVTREHVSWLQSQARQSRRLGAVCT
EEEECCCCEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEC
GSWALACAGLLDGFDCSVHWECLAAMQEAFPRVAMSTRLFTLDRNRFTSSGGTAPLDMML
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHH
HLISRDHGRELSAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEP
HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCCC
IDLDELAVYVAVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FVSTPHFSKCYREYFGIPPRDERVGSNTTQQVAMMPLPQAIVMSPLSGPMSALSQARNES
CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHEEECCCCHHHHHCCCCCHHHHHHHHHCCC
TFASVRL
CHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]