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The map label for this gene is hcpA [H]

Identifier: 77461433

GI number: 77461433

Start: 5861290

End: 5861775

Strand: Direct

Name: hcpA [H]

Synonym: Pfl01_5212

Alternate gene names: 77461433

Gene position: 5861290-5861775 (Clockwise)

Preceding gene: 77461432

Following gene: 77461434

Centisome position: 91.04

GC content: 54.94

Gene sequence:

>486_bases
ATGGCGAACCCTGCCTACATGACCATTACCGGCAAGACTCAAGGCCTTATTTCAGCCGGGTGTTCGACCCCGGAATCGGT
CGGCAACAAATACCAAAAAGCCCATACCGATGAAATCATGGTGTTCGCCTTGAGCCATGAAATGCGCCGCGACAACAACC
TCGGCAAAGCCGTCCACCAACCGGTCATCATCACTAAAGCGGTCGACAAATCCTCCCCCTTGCTGGCCCAGGCGCATTCG
AACAGCGAAGAACTCGAATGCACGATCAGCCTTTACCGAACCTCGCCTCAAGGTCAGCAGGAGAAGTTTTATTCAATTTC
CCTCGATGGGGCCGTTCTGGCTGAACTCTCGCAGGAAGTGCCCCACGTCATTCTGCAAAACGACGCTCAACCTCAAGAAC
AACTGGCCATTCGTTACCGCGGCATCAGTTGGGTACACCACATTGCGGGCACCACCGGCCATACCTCGTGGGGTAGCCAG
GATTGA

Upstream 100 bases:

>100_bases
TATCGACTGAGCATTTTCAGAATAAACCTACACCAGGACCTACATAAACCAAACAGGCTTCGCCATAGACTGCCTGCTCC
TTTTTCGAGGAGTGCTGACT

Downstream 100 bases:

>100_bases
ACCCTCGACCACATGATCCCTGCGGCGTTGAGGATGCCGCCGGCAATCTGCTCGGCCAGGCGCTGACCGCCAGTGCTCGC
CATCTGGCGTTCGGCATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MANPAYMTITGKTQGLISAGCSTPESVGNKYQKAHTDEIMVFALSHEMRRDNNLGKAVHQPVIITKAVDKSSPLLAQAHS
NSEELECTISLYRTSPQGQQEKFYSISLDGAVLAELSQEVPHVILQNDAQPQEQLAIRYRGISWVHHIAGTTGHTSWGSQ
D

Sequences:

>Translated_161_residues
MANPAYMTITGKTQGLISAGCSTPESVGNKYQKAHTDEIMVFALSHEMRRDNNLGKAVHQPVIITKAVDKSSPLLAQAHS
NSEELECTISLYRTSPQGQQEKFYSISLDGAVLAELSQEVPHVILQNDAQPQEQLAIRYRGISWVHHIAGTTGHTSWGSQ
D
>Mature_160_residues
ANPAYMTITGKTQGLISAGCSTPESVGNKYQKAHTDEIMVFALSHEMRRDNNLGKAVHQPVIITKAVDKSSPLLAQAHSN
SEELECTISLYRTSPQGQQEKFYSISLDGAVLAELSQEVPHVILQNDAQPQEQLAIRYRGISWVHHIAGTTGHTSWGSQD

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

Organism=Escherichia coli, GI1789850, Length=151, Percent_Identity=39.0728476821192, Blast_Score=103, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17642; Mature: 17511

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPAYMTITGKTQGLISAGCSTPESVGNKYQKAHTDEIMVFALSHEMRRDNNLGKAVHQ
CCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCHHHHC
PVIITKAVDKSSPLLAQAHSNSEELECTISLYRTSPQGQQEKFYSISLDGAVLAELSQEV
CEEEEEECCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHC
PHVILQNDAQPQEQLAIRYRGISWVHHIAGTTGHTSWGSQD
CEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ANPAYMTITGKTQGLISAGCSTPESVGNKYQKAHTDEIMVFALSHEMRRDNNLGKAVHQ
CCCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCHHHHC
PVIITKAVDKSSPLLAQAHSNSEELECTISLYRTSPQGQQEKFYSISLDGAVLAELSQEV
CEEEEEECCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHC
PHVILQNDAQPQEQLAIRYRGISWVHHIAGTTGHTSWGSQD
CEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]