| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ygcW [C]
Identifier: 77461432
GI number: 77461432
Start: 5860375
End: 5861199
Strand: Direct
Name: ygcW [C]
Synonym: Pfl01_5211
Alternate gene names: 77461432
Gene position: 5860375-5861199 (Clockwise)
Preceding gene: 77461431
Following gene: 77461433
Centisome position: 91.02
GC content: 60.48
Gene sequence:
>825_bases ATGTCGCTAAAAGGCAAAACCTTGTTCATCACTGGCGCCAGCCGTGGCATCGGGCGCGAGATTGCGCTGCGGGCTGCACA GGACGGGGCCAATATCGTGATCGCGGCCAAGAGCGCCGAGCCGCACGCCAAGTTGCCCGGCACCATCCACAGCGTCGCCG TTGAAGTCGAAGCGGCCGGCGGCAAGGCCCTGGCGCTGCAACTGGATGTGCGGGATGAGGAGGCGGTGCGACAGGCGCTG GCCCAGGCCAATCAACATTTTGGCGGGATCGATGCGCTGGTGAACAACGCCGGGGCGATCAAGTTGACCGGTGTGCAGCA CATCGAACTCAAGCGTTTCGACCTGATGCACCAGATCAACACCCGCGCGGTGTTGCTGTGCAGCCAGGCGGCCTTGCCCT ACCTGAAGAAATCCTCCGGGCACATCCTTAACCTGTCACCGCCGCTGAATCTGGCCAGTAAGTGGTTCGCCCAGTACAGC CCCTACACCGTGACCAAGTACGGCATGAGCATGCTGACGGTCGGGATGAGCGAGGAGTTTGCCAACTACGGCATCAGCGT CAATTCGCTGTGGCCGCAGACCATGATTGCCACGGCAGCCATCGAGTTTCAGCTGGGCAATCGGGAGTCGTTCAAGCATG CGCGCACACCAGCGATCATGGCGGATGCGGCGCATGTGATTCTGAGCAGCAGCGGGCGGCGGATTACCGGGCGGTTGTTG ATTGATGAAGAGATCTTGCGCGAAAGCGGCGTGAGCGAATTCGACCACTATCGGTTTGAGCCGAAGAGTGACGCGAAGTT GATGACGGATCTGTTTATCGACTGA
Upstream 100 bases:
>100_bases CCTGCTCCCACGCCACAGCTCCTCCCCCTCCTGTTTCAGCTCCATCGTCTACATTGTCTGTCGAGCCATCGCTCACATAA CAATAAGCAGGAGCTTGCGC
Downstream 100 bases:
>100_bases GCATTTTCAGAATAAACCTACACCAGGACCTACATAAACCAAACAGGCTTCGCCATAGACTGCCTGCTCCTTTTTCGAGG AGTGCTGACTATGGCGAACC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSLKGKTLFITGASRGIGREIALRAAQDGANIVIAAKSAEPHAKLPGTIHSVAVEVEAAGGKALALQLDVRDEEAVRQAL AQANQHFGGIDALVNNAGAIKLTGVQHIELKRFDLMHQINTRAVLLCSQAALPYLKKSSGHILNLSPPLNLASKWFAQYS PYTVTKYGMSMLTVGMSEEFANYGISVNSLWPQTMIATAAIEFQLGNRESFKHARTPAIMADAAHVILSSSGRRITGRLL IDEEILRESGVSEFDHYRFEPKSDAKLMTDLFID
Sequences:
>Translated_274_residues MSLKGKTLFITGASRGIGREIALRAAQDGANIVIAAKSAEPHAKLPGTIHSVAVEVEAAGGKALALQLDVRDEEAVRQAL AQANQHFGGIDALVNNAGAIKLTGVQHIELKRFDLMHQINTRAVLLCSQAALPYLKKSSGHILNLSPPLNLASKWFAQYS PYTVTKYGMSMLTVGMSEEFANYGISVNSLWPQTMIATAAIEFQLGNRESFKHARTPAIMADAAHVILSSSGRRITGRLL IDEEILRESGVSEFDHYRFEPKSDAKLMTDLFID >Mature_273_residues SLKGKTLFITGASRGIGREIALRAAQDGANIVIAAKSAEPHAKLPGTIHSVAVEVEAAGGKALALQLDVRDEEAVRQALA QANQHFGGIDALVNNAGAIKLTGVQHIELKRFDLMHQINTRAVLLCSQAALPYLKKSSGHILNLSPPLNLASKWFAQYSP YTVTKYGMSMLTVGMSEEFANYGISVNSLWPQTMIATAAIEFQLGNRESFKHARTPAIMADAAHVILSSSGRRITGRLLI DEEILRESGVSEFDHYRFEPKSDAKLMTDLFID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254986, Length=273, Percent_Identity=53.4798534798535, Blast_Score=277, Evalue=9e-75, Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=31.0679611650485, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=31.0679611650485, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI19923817, Length=278, Percent_Identity=24.8201438848921, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI32455239, Length=180, Percent_Identity=30, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI5031765, Length=180, Percent_Identity=30, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI31542939, Length=208, Percent_Identity=28.3653846153846, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=24.0816326530612, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254992, Length=190, Percent_Identity=27.8947368421053, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI59889578, Length=157, Percent_Identity=28.0254777070064, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=27.7486910994764, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI87082160, Length=194, Percent_Identity=32.9896907216495, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI87082100, Length=193, Percent_Identity=33.160621761658, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789208, Length=197, Percent_Identity=31.4720812182741, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=32.9842931937173, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1790717, Length=226, Percent_Identity=30.0884955752212, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788459, Length=191, Percent_Identity=32.4607329842932, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=27.979274611399, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789378, Length=241, Percent_Identity=26.9709543568465, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=25.7028112449799, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982365, Length=270, Percent_Identity=54.0740740740741, Blast_Score=300, Evalue=4e-82, Organism=Caenorhabditis elegans, GI17558628, Length=270, Percent_Identity=52.962962962963, Blast_Score=283, Evalue=8e-77, Organism=Caenorhabditis elegans, GI17544670, Length=195, Percent_Identity=30.2564102564103, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562910, Length=196, Percent_Identity=30.1020408163265, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562904, Length=195, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562906, Length=199, Percent_Identity=28.1407035175879, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17555612, Length=283, Percent_Identity=28.9752650176678, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=32.1782178217822, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17562990, Length=209, Percent_Identity=31.1004784688995, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=30.9644670050761, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71994604, Length=188, Percent_Identity=26.5957446808511, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17559104, Length=195, Percent_Identity=29.7435897435897, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17551412, Length=193, Percent_Identity=31.0880829015544, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=27.8810408921933, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17563726, Length=198, Percent_Identity=32.3232323232323, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=25.531914893617, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17560332, Length=200, Percent_Identity=28.5, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17507613, Length=228, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI32563809, Length=228, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI86565303, Length=226, Percent_Identity=27.8761061946903, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17538480, Length=196, Percent_Identity=27.5510204081633, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=30.2040816326531, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=199, Percent_Identity=30.1507537688442, Blast_Score=73, Evalue=5e-14, Organism=Drosophila melanogaster, GI21357673, Length=273, Percent_Identity=55.6776556776557, Blast_Score=313, Evalue=6e-86, Organism=Drosophila melanogaster, GI28571526, Length=195, Percent_Identity=32.3076923076923, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=35.0515463917526, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=29.4416243654822, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI24643142, Length=194, Percent_Identity=29.8969072164948, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21356301, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24639444, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=25, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29742; Mature: 29610
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKGKTLFITGASRGIGREIALRAAQDGANIVIAAKSAEPHAKLPGTIHSVAVEVEAAG CCCCCCEEEEEECCCCCCHHHEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEECC GKALALQLDVRDEEAVRQALAQANQHFGGIDALVNNAGAIKLTGVQHIELKRFDLMHQIN CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCEEEECCCEEEEHHHHHHHHHCC TRAVLLCSQAALPYLKKSSGHILNLSPPLNLASKWFAQYSPYTVTKYGMSMLTVGMSEEF CEEEEEECCCCCCHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEHHHCHHHEEECCHHHH ANYGISVNSLWPQTMIATAAIEFQLGNRESFKHARTPAIMADAAHVILSSSGRRITGRLL HHCCEEECCCCCHHHHEEEEEEEEECCCHHHHHHCCCCHHHHHHHEEECCCCCEEEEEEE IDEEILRESGVSEFDHYRFEPKSDAKLMTDLFID ECHHHHHHCCCCHHHHEECCCCCCHHHHHHHHCC >Mature Secondary Structure SLKGKTLFITGASRGIGREIALRAAQDGANIVIAAKSAEPHAKLPGTIHSVAVEVEAAG CCCCCEEEEEECCCCCCHHHEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEECC GKALALQLDVRDEEAVRQALAQANQHFGGIDALVNNAGAIKLTGVQHIELKRFDLMHQIN CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCEEEECCCEEEEHHHHHHHHHCC TRAVLLCSQAALPYLKKSSGHILNLSPPLNLASKWFAQYSPYTVTKYGMSMLTVGMSEEF CEEEEEECCCCCCHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEHHHCHHHEEECCHHHH ANYGISVNSLWPQTMIATAAIEFQLGNRESFKHARTPAIMADAAHVILSSSGRRITGRLL HHCCEEECCCCCHHHHEEEEEEEEECCCHHHHHHCCCCHHHHHHHEEECCCCCEEEEEEE IDEEILRESGVSEFDHYRFEPKSDAKLMTDLFID ECHHHHHHCCCCHHHHEECCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9655913; 12597275 [H]