Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

Click here to switch to the map view.

The map label for this gene is yeaH [C]

Identifier: 77461361

GI number: 77461361

Start: 5776168

End: 5777439

Strand: Direct

Name: yeaH [C]

Synonym: Pfl01_5140

Alternate gene names: 77461361

Gene position: 5776168-5777439 (Clockwise)

Preceding gene: 77461360

Following gene: 77461362

Centisome position: 89.71

GC content: 57.7

Gene sequence:

>1272_bases
ATGAGCTATGTGATCGACCGACGTCTCAATGGCAAGAACAAGAGCACGGTGAACCGTCAGCGCTTCCTGCGGCGTTACCG
TGACCACATCAAGAAGGCTGTCGAAGAGGCGGTCAGCCGGCGTTCCATCACCGATATGGAGCACGGCGAGCAGATCAGCA
TCCCTGGTCGCGATATCGACGAACCGGTGCTTCACCATGGTCGCGGCGGCAAGCAGACCGTGGTTCATCCCGGCAACAAG
GAATTCACCGCTGGCGAACACATCGCGCGTCCGCCGGGAGGTGGTGGTGGCCGTGGGCCGGGCAAGGCCGGCAACTCCGG
TGAAGGCATGGACGAGTTCGTCTTCCAGATCACCCAGGAAGAATTCCTCGAATTCATGTTCGAGGACCTCGAACTGCCCA
ACCTGGTCAAGCGCAACCTGACCGGCACCGACACTTTCAAGACCGTACGTGCGGGGATCAGCAACGAGGGCAACCCTTCG
CGGATCAACATTATCCGTACCCTGCGCTCGGCCCATGCCCGGCGCATTGCGTTATCGGGCAGCAGCCGCGCCAAACTGCG
CGAGGTCAAGGAGGAACTGGCGCGACTCAAACGCGAAGAACCGGACAACTTCGGGGATATTCAGGATCTTGAAGCAGAAA
TCGAACGACTCAGTGCGCGTATCCATCGCGTGCCGTTTCTCGATACGTTCGATTTGAAATACAACCTGCTGGTCAAGCAA
CCCAATCCAAGCTCCAAAGCCGTGATGTTCTGCCTGATGGACGTTTCCGGCTCCATGACCCAGGCAACCAAGGACATCGC
CAAGCGGTTTTTCATCTTGTTGTACCTTTTCCTCAAGCGGAACTACGACAAGATCGACGTGGTGTTCATCCGCCACCACA
CCAGCGCCCGCGAAGTCGACGAAGAGGAGTTCTTCTATTCCCGCGAGACCGGCGGCACCATCGTTTCCAGCGCCTTGAAA
CTGATGCAGGAGATCATGGCCGAGCGCTACCCGAGCAATGAATGGAACATCTACGCCGCCCAGGCTTCCGACGGCGACAA
CTGGAACGACGACTCGCCGATCTGCCGCGACATCCTGATCAACCAGATCATGCCGTTCGTGCAGTACTACACTTACGTGG
AGATCACCCCGCGCGAACATCAGGCCTTGTGGTACGAATACGAACGCATCGCCGAAGCTTTTTCCGACACTTTTGCCCAG
CAACAACTGGTCTCGGCCGGGGATATCTATCCGGTCTTCCGTGAACTCTTCCAGCGCAGGTTAGTGACATGA

Upstream 100 bases:

>100_bases
AGCACCCAGAGCGCTTGGGGGAGCGTGTACGTCCCTTGGCATTCGGTTCAATGCTGCATGACCGCTCGCCCCTTGGCAGG
ACAGCTTCTAAGGAGCAGTC

Downstream 100 bases:

>100_bases
CCGCCAAGACCGCCAAAGAGCAGAAGCGCCAACCCATTTCCACCGGCTCGGAATGGACATTCGAGCTGATCCAGACGTAC
GACCGTGAAATCGCCCGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSYVIDRRLNGKNKSTVNRQRFLRRYRDHIKKAVEEAVSRRSITDMEHGEQISIPGRDIDEPVLHHGRGGKQTVVHPGNK
EFTAGEHIARPPGGGGGRGPGKAGNSGEGMDEFVFQITQEEFLEFMFEDLELPNLVKRNLTGTDTFKTVRAGISNEGNPS
RINIIRTLRSAHARRIALSGSSRAKLREVKEELARLKREEPDNFGDIQDLEAEIERLSARIHRVPFLDTFDLKYNLLVKQ
PNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKIDVVFIRHHTSAREVDEEEFFYSRETGGTIVSSALK
LMQEIMAERYPSNEWNIYAAQASDGDNWNDDSPICRDILINQIMPFVQYYTYVEITPREHQALWYEYERIAEAFSDTFAQ
QQLVSAGDIYPVFRELFQRRLVT

Sequences:

>Translated_423_residues
MSYVIDRRLNGKNKSTVNRQRFLRRYRDHIKKAVEEAVSRRSITDMEHGEQISIPGRDIDEPVLHHGRGGKQTVVHPGNK
EFTAGEHIARPPGGGGGRGPGKAGNSGEGMDEFVFQITQEEFLEFMFEDLELPNLVKRNLTGTDTFKTVRAGISNEGNPS
RINIIRTLRSAHARRIALSGSSRAKLREVKEELARLKREEPDNFGDIQDLEAEIERLSARIHRVPFLDTFDLKYNLLVKQ
PNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKIDVVFIRHHTSAREVDEEEFFYSRETGGTIVSSALK
LMQEIMAERYPSNEWNIYAAQASDGDNWNDDSPICRDILINQIMPFVQYYTYVEITPREHQALWYEYERIAEAFSDTFAQ
QQLVSAGDIYPVFRELFQRRLVT
>Mature_422_residues
SYVIDRRLNGKNKSTVNRQRFLRRYRDHIKKAVEEAVSRRSITDMEHGEQISIPGRDIDEPVLHHGRGGKQTVVHPGNKE
FTAGEHIARPPGGGGGRGPGKAGNSGEGMDEFVFQITQEEFLEFMFEDLELPNLVKRNLTGTDTFKTVRAGISNEGNPSR
INIIRTLRSAHARRIALSGSSRAKLREVKEELARLKREEPDNFGDIQDLEAEIERLSARIHRVPFLDTFDLKYNLLVKQP
NPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKIDVVFIRHHTSAREVDEEEFFYSRETGGTIVSSALKL
MQEIMAERYPSNEWNIYAAQASDGDNWNDDSPICRDILINQIMPFVQYYTYVEITPREHQALWYEYERIAEAFSDTFAQQ
QLVSAGDIYPVFRELFQRRLVT

Specific function: Unknown

COG id: COG2718

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0229 family [H]

Homologues:

Organism=Escherichia coli, GI1788084, Length=425, Percent_Identity=56.4705882352941, Blast_Score=489, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006698 [H]

Pfam domain/function: PF04285 DUF444 [H]

EC number: NA

Molecular weight: Translated: 48665; Mature: 48533

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYVIDRRLNGKNKSTVNRQRFLRRYRDHIKKAVEEAVSRRSITDMEHGEQISIPGRDID
CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
EPVLHHGRGGKQTVVHPGNKEFTAGEHIARPPGGGGGRGPGKAGNSGEGMDEFVFQITQE
HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
EFLEFMFEDLELPNLVKRNLTGTDTFKTVRAGISNEGNPSRINIIRTLRSAHARRIALSG
HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECC
SSRAKLREVKEELARLKREEPDNFGDIQDLEAEIERLSARIHRVPFLDTFDLKYNLLVKQ
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEC
PNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKIDVVFIRHHTSAREVD
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHCC
EEEFFYSRETGGTIVSSALKLMQEIMAERYPSNEWNIYAAQASDGDNWNDDSPICRDILI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH
NQIMPFVQYYTYVEITPREHQALWYEYERIAEAFSDTFAQQQLVSAGDIYPVFRELFQRR
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LVT
CCC
>Mature Secondary Structure 
SYVIDRRLNGKNKSTVNRQRFLRRYRDHIKKAVEEAVSRRSITDMEHGEQISIPGRDID
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
EPVLHHGRGGKQTVVHPGNKEFTAGEHIARPPGGGGGRGPGKAGNSGEGMDEFVFQITQE
HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
EFLEFMFEDLELPNLVKRNLTGTDTFKTVRAGISNEGNPSRINIIRTLRSAHARRIALSG
HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECC
SSRAKLREVKEELARLKREEPDNFGDIQDLEAEIERLSARIHRVPFLDTFDLKYNLLVKQ
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEC
PNPSSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYDKIDVVFIRHHTSAREVD
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHCC
EEEFFYSRETGGTIVSSALKLMQEIMAERYPSNEWNIYAAQASDGDNWNDDSPICRDILI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH
NQIMPFVQYYTYVEITPREHQALWYEYERIAEAFSDTFAQQQLVSAGDIYPVFRELFQRR
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LVT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA