| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is lptD
Identifier: 77461353
GI number: 77461353
Start: 5766091
End: 5768904
Strand: Direct
Name: lptD
Synonym: Pfl01_5132
Alternate gene names: 77461353
Gene position: 5766091-5768904 (Clockwise)
Preceding gene: 77461349
Following gene: 77461354
Centisome position: 89.56
GC content: 59.24
Gene sequence:
>2814_bases ATGGCATTGAAATCCCCCGCGTTTCGTAAAAAATTTCCGTTGTTGGTAACCGGCAGTCTGCTGGCTATGCAACCTCTGGC CAGTTCATTCGTTGTTGCCGCCGAGCAGTATGACTGCGCCGTCTCGGCAACGGGTGGCTGGGCCTGCTCGCCGAAGACGC CGGCCGCTGCCTTGCCGCCGCGTCCCGTGCATGACGGCAGTGCCGTCAGCGCCGCTGGCGAAGCCCCGGCCGAGAGCGGC TCCACTGCGGAGTCCGGGCCCAAGCCGGTACTGGTTACCGAGTCCAAGGGCCGTGGCCTGAAATCCCGTAGCGAAGACTA CAGTCACCTCGACTGGGTTCCGCGCGAGAAGCTCACCGCCGCCCAACTGGCCGAGACCGGTCCTTACTGCTCTGGTTCCT ATATCGAACCGATTCGTCCTGGCATGAATGACAAGACGAATAAAAGTGACGCCCCGACCTTCATCGGCGCCAAGGCGTCG CGTTATCAGCAGGATTCGCAGGTTGCGAGTCTGGCCGGTGACGTGGTCATGCGTCAGGGCAGCATGCAGGTCGAAGCCGA CGAGGCCAACCTGTATCAGGCCGAAAGCCGTGGCGAACTGGCCGGCAACGTGCGCATTCGCGACAACGGCGCGCTGATCG TCGGTGACCACGCCGATGTGCAGCTCGACACCGGTGAAGCCAAGGTCGACAACGCCGAATACGTCATGCACAAGTCGCGC ATCCGCGGTAACGCGCTGTACGCCAAGCGTGCCGAAAACGCGATCATCCGTCTGAAGGACGGCACGTACACCACGTGCGA ACCGAACAGCAACGCCTGGCAGCTCAAGGGCAACAACATCACCCTGAACCCTGCCACCGGCTTCGGTACCGCGACCAACG TGACGCTGCGGGTCAAGGACATTCCGGTCCTGTACACCCCGTACATCTACTTCCCGATCGACGATCGTCGTCAGTCGGGT TTCCTGCCGCCGACCATCGGCACCGGCAGCGACACCGGCTTCATGCTGGTGACCCCGTACTACTTCAACCTGGCACCGAA CTACGATGCCACGTTGTATCCACGCTACATGGCTAAACGCGGTCTGTTGATGGAGGGCGAATTCCGCTACCTCACCAAGT CCAGCGAAGGGCAGTTCGGTGCGGCGTTCCTCAACGACGAGGAAACCGAGCGCAGCAAACAGACCGACTACCAGAAGAAT CGCTACATGTACAACTGGCAACACAAGGGTGGTCTCGACTCCCGCGTGTTCACCCAGGTGGACTACACCAAGATCAGCGA TCCGTACTACTTCCAGGATCTGCAGACCGATCAGATCGGTGTGAAGAGCGCCGACTTCGTGAACCAGCAGGGCTCGGTTA CCTATCGTGGCGACAACTACACCGCGCGCCTGAATGCGCAGGCCTACCAACTTGCCACCGTATCGAACATCACACCGTAT GACCGTCTGCCGCAGATCACCTTCAATGGTCAGCTGCCGTATCACCCGGAAGGTCTGAACTTCGATTACGAGACCGAGGT CGTTCGCTTCGACCGTGACCTGCAAAATGGCAACTTCGTTAATGAAGACGGCACTGTGGAACGCCGCCTGGACAATAACG TCATCGGCCTGGCCCGTGCCAACGGCGATCGTTTGAACCTGAAGCCAAGCGTCAGCCTGCCGCTCAACTGGACCTACGGT TTCCTCAAGCCATCGCTCAAGTACCAGTACACCCAGTACCAGCTGGATCTGGACGGGACCGGCAAGAGCCAGATCGTCGC TCAACAGAACGCGGCAGCCGCGACCGGCACCCGCTATGTCGGCGGTGAATTCGGCAGCAGCCAGAACCGTGGCGTACCGA TCGCCAGCATCGATGGCGGCCTGTACTTCGACCGCAACACCACCTGGTTCGGCAAGAATTATCGCCAGACCCTGGAACCT CGCCTGTTCTATCTCTATGTACCCGAGAAAGACCAGGAAGACATTCCAGTCTTCGATACCAGCGAATACACCTTCAACTA TGCGTCGCTGTTCCGTGACAACCGCTTCTCCGGCTCCGACCGCGTCGGTGACGAGAACAAACTGTCGCTGGGCATCGACA ACCGCTGGATCGAGGAAGACGGCTTCGAGCGTCAACGCATCAGTATCGGTCAGGCACTCTACTTCAAGGATCGTGAAGTC CAGTTGCCGGGCATTGATCCGAAGACCCGCGACGACGCGCATTCCAATGTTTCGCCGTACGCTCTGGAATACGAGTACCG CTGGAACCGCGACTGGCGCACCACTGCCGATTACAACTGGGATCCGGACAGCCGCAGCCCACGCTCCGGCAGTGCAATGC TCCACTACCAGCCTGAAGACAACCCGAACAAGGTGGTCAACGTCGGTTATCGCTATCGCAACGACCAGGTTCGTTACGAC CAGAACACCGGTAAATGGTCGGTGGGCGGCGGTGACTACGGCACACCGGGCCAGCCTGGCTACGTGAAGGACTACTACAA GATCCAGCAGCATGACTTCTCGGTCATCTGGCCGATCGTTCCGCAGTGGAGCGCGATCAGCCGCTGGCAGTACGACTACA ACCGCAATCGCACGCTGGAAGCCTTCGGTGGTTTCGAATATGACAACTGCTGCTGGAAACTGCGCCTGATCAACCGTTAC TGGGTCAGCTATGACGAATTCAGTCAGAACGCCCCGGAAAACGAAAAAGGCGACCACGGCGTCTTCCTCCAAATTGTTCT GAAGGGACTCGGCGGCCTCACCGGCGCCAAGGTAGAGAGCTTCCTCGACAAAGGCATCCAAGGTTATCGTCAACGTGAAG ACCAAGCTTTCTGA
Upstream 100 bases:
>100_bases AGCGGGTCATGCTTTATTATCCAGCATCTTTTTCAGACCATCGAGAGGCGTGCGGCCCACACCGCGGGCAGATGGCACGC AGGAAGCCCGGACTAATAAG
Downstream 100 bases:
>100_bases TTGTCTGCGCCCGCTGATGCTGGGCGCGCTGTTCCTGGGTACCGCGGCCAACGCCGCGGTGCAGTCCATCGATAGAGTGG TGGCCATCGTCGACAACGAT
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein
Number of amino acids: Translated: 937; Mature: 936
Protein sequence:
>937_residues MALKSPAFRKKFPLLVTGSLLAMQPLASSFVVAAEQYDCAVSATGGWACSPKTPAAALPPRPVHDGSAVSAAGEAPAESG STAESGPKPVLVTESKGRGLKSRSEDYSHLDWVPREKLTAAQLAETGPYCSGSYIEPIRPGMNDKTNKSDAPTFIGAKAS RYQQDSQVASLAGDVVMRQGSMQVEADEANLYQAESRGELAGNVRIRDNGALIVGDHADVQLDTGEAKVDNAEYVMHKSR IRGNALYAKRAENAIIRLKDGTYTTCEPNSNAWQLKGNNITLNPATGFGTATNVTLRVKDIPVLYTPYIYFPIDDRRQSG FLPPTIGTGSDTGFMLVTPYYFNLAPNYDATLYPRYMAKRGLLMEGEFRYLTKSSEGQFGAAFLNDEETERSKQTDYQKN RYMYNWQHKGGLDSRVFTQVDYTKISDPYYFQDLQTDQIGVKSADFVNQQGSVTYRGDNYTARLNAQAYQLATVSNITPY DRLPQITFNGQLPYHPEGLNFDYETEVVRFDRDLQNGNFVNEDGTVERRLDNNVIGLARANGDRLNLKPSVSLPLNWTYG FLKPSLKYQYTQYQLDLDGTGKSQIVAQQNAAAATGTRYVGGEFGSSQNRGVPIASIDGGLYFDRNTTWFGKNYRQTLEP RLFYLYVPEKDQEDIPVFDTSEYTFNYASLFRDNRFSGSDRVGDENKLSLGIDNRWIEEDGFERQRISIGQALYFKDREV QLPGIDPKTRDDAHSNVSPYALEYEYRWNRDWRTTADYNWDPDSRSPRSGSAMLHYQPEDNPNKVVNVGYRYRNDQVRYD QNTGKWSVGGGDYGTPGQPGYVKDYYKIQQHDFSVIWPIVPQWSAISRWQYDYNRNRTLEAFGGFEYDNCCWKLRLINRY WVSYDEFSQNAPENEKGDHGVFLQIVLKGLGGLTGAKVESFLDKGIQGYRQREDQAF
Sequences:
>Translated_937_residues MALKSPAFRKKFPLLVTGSLLAMQPLASSFVVAAEQYDCAVSATGGWACSPKTPAAALPPRPVHDGSAVSAAGEAPAESG STAESGPKPVLVTESKGRGLKSRSEDYSHLDWVPREKLTAAQLAETGPYCSGSYIEPIRPGMNDKTNKSDAPTFIGAKAS RYQQDSQVASLAGDVVMRQGSMQVEADEANLYQAESRGELAGNVRIRDNGALIVGDHADVQLDTGEAKVDNAEYVMHKSR IRGNALYAKRAENAIIRLKDGTYTTCEPNSNAWQLKGNNITLNPATGFGTATNVTLRVKDIPVLYTPYIYFPIDDRRQSG FLPPTIGTGSDTGFMLVTPYYFNLAPNYDATLYPRYMAKRGLLMEGEFRYLTKSSEGQFGAAFLNDEETERSKQTDYQKN RYMYNWQHKGGLDSRVFTQVDYTKISDPYYFQDLQTDQIGVKSADFVNQQGSVTYRGDNYTARLNAQAYQLATVSNITPY DRLPQITFNGQLPYHPEGLNFDYETEVVRFDRDLQNGNFVNEDGTVERRLDNNVIGLARANGDRLNLKPSVSLPLNWTYG FLKPSLKYQYTQYQLDLDGTGKSQIVAQQNAAAATGTRYVGGEFGSSQNRGVPIASIDGGLYFDRNTTWFGKNYRQTLEP RLFYLYVPEKDQEDIPVFDTSEYTFNYASLFRDNRFSGSDRVGDENKLSLGIDNRWIEEDGFERQRISIGQALYFKDREV QLPGIDPKTRDDAHSNVSPYALEYEYRWNRDWRTTADYNWDPDSRSPRSGSAMLHYQPEDNPNKVVNVGYRYRNDQVRYD QNTGKWSVGGGDYGTPGQPGYVKDYYKIQQHDFSVIWPIVPQWSAISRWQYDYNRNRTLEAFGGFEYDNCCWKLRLINRY WVSYDEFSQNAPENEKGDHGVFLQIVLKGLGGLTGAKVESFLDKGIQGYRQREDQAF >Mature_936_residues ALKSPAFRKKFPLLVTGSLLAMQPLASSFVVAAEQYDCAVSATGGWACSPKTPAAALPPRPVHDGSAVSAAGEAPAESGS TAESGPKPVLVTESKGRGLKSRSEDYSHLDWVPREKLTAAQLAETGPYCSGSYIEPIRPGMNDKTNKSDAPTFIGAKASR YQQDSQVASLAGDVVMRQGSMQVEADEANLYQAESRGELAGNVRIRDNGALIVGDHADVQLDTGEAKVDNAEYVMHKSRI RGNALYAKRAENAIIRLKDGTYTTCEPNSNAWQLKGNNITLNPATGFGTATNVTLRVKDIPVLYTPYIYFPIDDRRQSGF LPPTIGTGSDTGFMLVTPYYFNLAPNYDATLYPRYMAKRGLLMEGEFRYLTKSSEGQFGAAFLNDEETERSKQTDYQKNR YMYNWQHKGGLDSRVFTQVDYTKISDPYYFQDLQTDQIGVKSADFVNQQGSVTYRGDNYTARLNAQAYQLATVSNITPYD RLPQITFNGQLPYHPEGLNFDYETEVVRFDRDLQNGNFVNEDGTVERRLDNNVIGLARANGDRLNLKPSVSLPLNWTYGF LKPSLKYQYTQYQLDLDGTGKSQIVAQQNAAAATGTRYVGGEFGSSQNRGVPIASIDGGLYFDRNTTWFGKNYRQTLEPR LFYLYVPEKDQEDIPVFDTSEYTFNYASLFRDNRFSGSDRVGDENKLSLGIDNRWIEEDGFERQRISIGQALYFKDREVQ LPGIDPKTRDDAHSNVSPYALEYEYRWNRDWRTTADYNWDPDSRSPRSGSAMLHYQPEDNPNKVVNVGYRYRNDQVRYDQ NTGKWSVGGGDYGTPGQPGYVKDYYKIQQHDFSVIWPIVPQWSAISRWQYDYNRNRTLEAFGGFEYDNCCWKLRLINRYW VSYDEFSQNAPENEKGDHGVFLQIVLKGLGGLTGAKVESFLDKGIQGYRQREDQAF
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family
Homologues:
Organism=Escherichia coli, GI1786239, Length=835, Percent_Identity=28.622754491018, Blast_Score=307, Evalue=2e-84,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): LPTD_PSEPF (Q3K5T5)
Other databases:
- EMBL: CP000094 - RefSeq: YP_350860.1 - STRING: Q3K5T5 - GeneID: 3717050 - GenomeReviews: CP000094_GR - KEGG: pfo:Pfl01_5132 - eggNOG: COG1452 - HOGENOM: HBG337018 - OMA: TPYYWNI - ProtClustDB: CLSK865972 - BioCyc: PFLU205922:PFL_5132-MONOMER - HAMAP: MF_01411 - InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543
Pfam domain/function: PF03968 OstA; PF04453 OstA_C
EC number: NA
Molecular weight: Translated: 105603; Mature: 105472
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALKSPAFRKKFPLLVTGSLLAMQPLASSFVVAAEQYDCAVSATGGWACSPKTPAAALPP CCCCCCCHHHCCCEEEECCHHHHHHHHHCEEEEEECCCEEEECCCCEEECCCCCCCCCCC RPVHDGSAVSAAGEAPAESGSTAESGPKPVLVTESKGRGLKSRSEDYSHLDWVPREKLTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH AQLAETGPYCSGSYIEPIRPGMNDKTNKSDAPTFIGAKASRYQQDSQVASLAGDVVMRQG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHEECC SMQVEADEANLYQAESRGELAGNVRIRDNGALIVGDHADVQLDTGEAKVDNAEYVMHKSR CEEEEECCCCEEECCCCCCEEEEEEEECCCEEEECCCCCEEEECCCCCCCCHHHHHHHHH IRGNALYAKRAENAIIRLKDGTYTTCEPNSNAWQLKGNNITLNPATGFGTATNVTLRVKD CCCCEEEEECCCCEEEEECCCCEEEECCCCCEEEEECCEEEECCCCCCCCEEEEEEEEEC IPVLYTPYIYFPIDDRRQSGFLPPTIGTGSDTGFMLVTPYYFNLAPNYDATLYPRYMAKR CCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCEECHHHHHHC GLLMEGEFRYLTKSSEGQFGAAFLNDEETERSKQTDYQKNRYMYNWQHKGGLDSRVFTQV CCEECCCEEEEEECCCCCEEEEECCCCHHHHHHHCCHHHCCEEEEEECCCCCCCCEEEEE DYTKISDPYYFQDLQTDQIGVKSADFVNQQGSVTYRGDNYTARLNAQAYQLATVSNITPY CCEECCCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCEEEEECCCEEEEEEECCCCCH DRLPQITFNGQLPYHPEGLNFDYETEVVRFDRDLQNGNFVNEDGTVERRLDNNVIGLARA HHCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCEEEECCCCEEEEEEC NGDRLNLKPSVSLPLNWTYGFLKPSLKYQYTQYQLDLDGTGKSQIVAQQNAAAATGTRYV CCCEEECCCCEECCEEEEHHCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCCCCCCEEE GGEFGSSQNRGVPIASIDGGLYFDRNTTWFGKNYRQTLEPRLFYLYVPEKDQEDIPVFDT CCCCCCCCCCCCEEEEECCCEEECCCCEECCCCHHHCCCCEEEEEECCCCCCCCCCEEEC SEYTFNYASLFRDNRFSGSDRVGDENKLSLGIDNRWIEEDGFERQRISIGQALYFKDREV CCCEEEHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCEEEEEECCEE QLPGIDPKTRDDAHSNVSPYALEYEYRWNRDWRTTADYNWDPDSRSPRSGSAMLHYQPED ECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC NPNKVVNVGYRYRNDQVRYDQNTGKWSVGGGDYGTPGQPGYVKDYYKIQQHDFSVIWPIV CCCCEEEEEEEECCCCEEEECCCCEEEECCCCCCCCCCCCCHHHHHEEECCCCEEEEECC PQWSAISRWQYDYNRNRTLEAFGGFEYDNCCWKLRLINRYWVSYDEFSQNAPENEKGDHG CCCCHHHEEEECCCCCCEEEECCCCCCCCEEEEEEEEEHHHCCHHHHHCCCCCCCCCCCC VFLQIVLKGLGGLTGAKVESFLDKGIQGYRQREDQAF HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ALKSPAFRKKFPLLVTGSLLAMQPLASSFVVAAEQYDCAVSATGGWACSPKTPAAALPP CCCCCCHHHCCCEEEECCHHHHHHHHHCEEEEEECCCEEEECCCCEEECCCCCCCCCCC RPVHDGSAVSAAGEAPAESGSTAESGPKPVLVTESKGRGLKSRSEDYSHLDWVPREKLTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH AQLAETGPYCSGSYIEPIRPGMNDKTNKSDAPTFIGAKASRYQQDSQVASLAGDVVMRQG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHEECC SMQVEADEANLYQAESRGELAGNVRIRDNGALIVGDHADVQLDTGEAKVDNAEYVMHKSR CEEEEECCCCEEECCCCCCEEEEEEEECCCEEEECCCCCEEEECCCCCCCCHHHHHHHHH IRGNALYAKRAENAIIRLKDGTYTTCEPNSNAWQLKGNNITLNPATGFGTATNVTLRVKD CCCCEEEEECCCCEEEEECCCCEEEECCCCCEEEEECCEEEECCCCCCCCEEEEEEEEEC IPVLYTPYIYFPIDDRRQSGFLPPTIGTGSDTGFMLVTPYYFNLAPNYDATLYPRYMAKR CCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCEECHHHHHHC GLLMEGEFRYLTKSSEGQFGAAFLNDEETERSKQTDYQKNRYMYNWQHKGGLDSRVFTQV CCEECCCEEEEEECCCCCEEEEECCCCHHHHHHHCCHHHCCEEEEEECCCCCCCCEEEEE DYTKISDPYYFQDLQTDQIGVKSADFVNQQGSVTYRGDNYTARLNAQAYQLATVSNITPY CCEECCCCEEECCCCCCCCCCCCHHHCCCCCCEEECCCCEEEEECCCEEEEEEECCCCCH DRLPQITFNGQLPYHPEGLNFDYETEVVRFDRDLQNGNFVNEDGTVERRLDNNVIGLARA HHCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCEEEECCCCEEEEEEC NGDRLNLKPSVSLPLNWTYGFLKPSLKYQYTQYQLDLDGTGKSQIVAQQNAAAATGTRYV CCCEEECCCCEECCEEEEHHCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCCCCCCEEE GGEFGSSQNRGVPIASIDGGLYFDRNTTWFGKNYRQTLEPRLFYLYVPEKDQEDIPVFDT CCCCCCCCCCCCEEEEECCCEEECCCCEECCCCHHHCCCCEEEEEECCCCCCCCCCEEEC SEYTFNYASLFRDNRFSGSDRVGDENKLSLGIDNRWIEEDGFERQRISIGQALYFKDREV CCCEEEHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCEEEEEECCEE QLPGIDPKTRDDAHSNVSPYALEYEYRWNRDWRTTADYNWDPDSRSPRSGSAMLHYQPED ECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC NPNKVVNVGYRYRNDQVRYDQNTGKWSVGGGDYGTPGQPGYVKDYYKIQQHDFSVIWPIV CCCCEEEEEEEECCCCEEEECCCCEEEECCCCCCCCCCCCCHHHHHEEECCCCEEEEECC PQWSAISRWQYDYNRNRTLEAFGGFEYDNCCWKLRLINRYWVSYDEFSQNAPENEKGDHG CCCCHHHEEEECCCCCCEEEECCCCCCCCEEEEEEEEEHHHCCHHHHHCCCCCCCCCCCC VFLQIVLKGLGGLTGAKVESFLDKGIQGYRQREDQAF HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA