Click here to switch to the map view.

The map label for this gene is 77461324

Identifier: 77461324

GI number: 77461324

Start: 5737804

End: 5738232

Strand: Direct

Name: 77461324

Synonym: Pfl01_5103

Alternate gene names: NA

Gene position: 5737804-5738232 (Clockwise)

Preceding gene: 77461321

Following gene: 77461325

Centisome position: 89.12

GC content: 55.01

Gene sequence:

>429_bases
ATGCTCTATCTGTGGATCAAAGCGCTGCATATCGTCAGCATCGTGTGCTGGTTTGCCGGCCTCTTCTATCTTCCGCGACT
GTTCGTTTATCACGCGCAAAGTGAAGACACGATCAGCAAGGAACGCTTCAGCATCATGGAGCGCAAGCTCTATCGCGGCA
TCATGGGCCCGGCAATGATCGCCGCGCTGATCTTCGGTGGCTGGCTGATCTATCTGAACCCGAGCATCTTCAGCAGCGGT
GGCTGGATCCACGCCAAACTGACCCTGGTCGTGCTGTTGATCGGCTACCACCACATGTGCGGCGCGCAGGTAAAACGTTT
TGCCCGTGGCGAGAACACCCGCAGCCATGTCTTTTATCGCTGGTTCAATGAAGTGCCGGTTCTGCTATTGCTGGCTATCG
TAATTCTGGTCGTGGTCAAGCCGTTCTAA

Upstream 100 bases:

>100_bases
GATAATAGGGGCCGCGCGCGCCTGCGACAACCGCCAAGGTGACGTGCGGACGCTCAAGCCTCTACTATCCGGCCTACCGT
GAATCAGGGAATAACCCAAA

Downstream 100 bases:

>100_bases
CTTCAACAAATACAACTTTCCGGGGTACTTCCGATGTCGCTGCCCGCTCTGCTCGAACAACGTCTGCGCCTGCCCGTAGT
GGCAGCACCGATGTTTCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MLYLWIKALHIVSIVCWFAGLFYLPRLFVYHAQSEDTISKERFSIMERKLYRGIMGPAMIAALIFGGWLIYLNPSIFSSG
GWIHAKLTLVVLLIGYHHMCGAQVKRFARGENTRSHVFYRWFNEVPVLLLLAIVILVVVKPF

Sequences:

>Translated_142_residues
MLYLWIKALHIVSIVCWFAGLFYLPRLFVYHAQSEDTISKERFSIMERKLYRGIMGPAMIAALIFGGWLIYLNPSIFSSG
GWIHAKLTLVVLLIGYHHMCGAQVKRFARGENTRSHVFYRWFNEVPVLLLLAIVILVVVKPF
>Mature_142_residues
MLYLWIKALHIVSIVCWFAGLFYLPRLFVYHAQSEDTISKERFSIMERKLYRGIMGPAMIAALIFGGWLIYLNPSIFSSG
GWIHAKLTLVVLLIGYHHMCGAQVKRFARGENTRSHVFYRWFNEVPVLLLLAIVILVVVKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 16416; Mature: 16416

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYLWIKALHIVSIVCWFAGLFYLPRLFVYHAQSEDTISKERFSIMERKLYRGIMGPAMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
AALIFGGWLIYLNPSIFSSGGWIHAKLTLVVLLIGYHHMCGAQVKRFARGENTRSHVFYR
HHHHHCCHHEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
WFNEVPVLLLLAIVILVVVKPF
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYLWIKALHIVSIVCWFAGLFYLPRLFVYHAQSEDTISKERFSIMERKLYRGIMGPAMI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
AALIFGGWLIYLNPSIFSSGGWIHAKLTLVVLLIGYHHMCGAQVKRFARGENTRSHVFYR
HHHHHCCHHEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
WFNEVPVLLLLAIVILVVVKPF
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]