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The map label for this gene is ybiO [H]

Identifier: 77461254

GI number: 77461254

Start: 5668630

End: 5670735

Strand: Reverse

Name: ybiO [H]

Synonym: Pfl01_5033

Alternate gene names: 77461254

Gene position: 5670735-5668630 (Counterclockwise)

Preceding gene: 77461260

Following gene: 77461252

Centisome position: 88.08

GC content: 62.25

Gene sequence:

>2106_bases
TTGACCAGGTTCAGGATCGCGATTCTATTGGGGGCATTGCTGTTGTTCGGTGGCAATGCAGTGCAAGCCGCCAGCCTGCC
GGGTGTTCCGGCGGCCAGTGAAGAGCCGGCCAAACCGGAACCGATCGTGCAGGGCGGACTGCTCGGCGCCATCAGTTCCG
GCATCGACGACGTGCAGGACAAACTCGATCTCAACGAGCATCTGGTCGACGCCTGGCGCCTGCGCGCCGACCGGGCGGCG
GATGAGGTCGACAGGCTGGTCAATCAACCTTCGAACCGCTCGGGCTGGAGCGTGGCGGGGGATTTCCTGATGCTTTCAGG
CGTGTGGCTGGGCACGTTTGCCGTGTTGACGGTGCTCGGCAGTGTGCTGGGCAAGCGTCTGCGGGAAGGGCGCTGGTTGC
GCACACGTCAGCGCAGCCAGGATTTGCTCGGTTACCTGTTGCCCTACACGCTGCCCGCACTCATCTGTCTGCCGCTGACC
CTGTACGTCAGCCATTTTCTGTCGGCCTCGGTCGGTCGGGCGCTGGCGCTGTGTTTTGCCTACGCCACCAGCAGCGGGAT
ATTTTCCACGTCGATGCTGTTGTGCGTGGTGGTGATGTTCAACGTCGGCCACAAGCGCCGCGCCGTGCAGATCATCCGCG
ACTACTGCCCGAAACCGCTGTTCCTGATCGGCTTTCTCGCCGCGTTGAGTGACGCCCTGACCAGCCCGCAGATCGCCCGG
CAACTGGGCGGCAACATCACCAGCAGCATTGCGGTGTTCACCGGTCTGCTGGCGTCGATCATCTTCGGCCTGCTGGTGAT
TCGCCTGCGTCGTCCGGTGGCGCACCTCATCCGTAATCGCCCGCTGGCCCAGCGCCTGAAGCAACCGTCGCTGCAGGAAT
CGCTGCGGATTTTTTCCGGGCTCTGGTATTGGCCGATCGTGCTGATGGTGCTGGTCTCGGCGGTGAATCTGATAGGCATC
GGCGAGGACAACCAGAAAGCCCTGCGCTGCGCGTTGCTCACCACGGTGCTATTGATCGGCGCGGTTTTTCTCAGCACCGT
GCTGCAGCACCTGTTCAAGTCGCGCAGGGCCGAGGCGATTCAGCGCAGCAGTGCCTACAAGGAACGTTTCCTCAGCCTGT
TGCACGCCTTGCTGCGGATCGTCATTGCAATTGCATTCATCGATATTCTCGGGCGGATCTGGGGCGTGTCGCTGCTCGAC
TTTGCCCAGAGCAGCACGGTCGGGCGGGCGATCAGCAATGCGCTGAGTAGCATCGGCCTGATCATTCTCGTGACGTGGCT
GCTGTGGGTGGTGCTCGACACGGCGATTCAGGAGGCGCTGAAACCGCCAGTCAGCAAACGCTCGGCGCGCCAGCCCAGCA
CTCGGGTGAAAACCATCCTGCCGCTGCTGCGCAACGCGATCAAAATCATCCTGGTGGTGATCTGTGCGATCACCACCATG
GCCAATCTCGGGATCAACGTCGCACCGCTGCTGGCCGGTGCCGGGGTGGTCGGCCTGGCCATCGGTTTCGGCTCGCAGCA
ATTGGTGCAGGACGTGATTACCGGGTTGTTCATCATCATCGAAGACACCCTGTCGATCGGCGACTGGGTGGTGCTCGATT
CCGGGCACGCCGGCACGGTCGAAGGCCTGACCATTCGCACCCTGCGCCTGCGCGACGGCAAGGGCTTCGTGCACTCGGTG
CCGTTCGGCCAGATCAAGGCCGTGACCAATCAATCGCGGCAGTTTGCGTTCGCGTTTTTCTCGGTGCAGTTCACCTACGA
CACCGATGTCGACAAGGCCATCGAACTGATCCGCGAGGCGGGGGATTCGATTCGCGAAGACCCGTTCCTCAAGTACAACC
TGCAAGGGCCGCTGGATGTGTTCGGTGTGGACAAGATGGACCTGAACGGTGTGGTGCTGACCGCGCAGTTCCGCACGGTC
TCGGGCGGGCAATACGCGGTGAGCCGCGCGTTCAACCAGCGTTTGAAAAAGCTTGTGGATAACAGCCCGTGGGTGCATTT
CGCCCAGACTTATCCACAGCAGGTTTTGTTGCCCAAGCGCCAGGAAGAAGAGGCGCCGCCGGCGCATTCGTCGGTGGTGT
TGCCGGAGCAGGTGCGCACTCAGTGA

Upstream 100 bases:

>100_bases
TGGGCGCAAAGATCAAAGAGCGGCTCTCAAGGCGTTCTTGAACTTTGCCAAGCCAAAACCGATCAGTTCCTTACAGGTTC
AACCAAGGGAGCTCTGCGTT

Downstream 100 bases:

>100_bases
CGGGTCAGCCTGTTGCGGATTTCGATCATGGCGGCGGAGTCCAGCTCCACCCAGAATTGCGGCTTGCCCGCGACCTCGGC
AGCGACCGGCAACCCGTCGC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 701; Mature: 700

Protein sequence:

>701_residues
MTRFRIAILLGALLLFGGNAVQAASLPGVPAASEEPAKPEPIVQGGLLGAISSGIDDVQDKLDLNEHLVDAWRLRADRAA
DEVDRLVNQPSNRSGWSVAGDFLMLSGVWLGTFAVLTVLGSVLGKRLREGRWLRTRQRSQDLLGYLLPYTLPALICLPLT
LYVSHFLSASVGRALALCFAYATSSGIFSTSMLLCVVVMFNVGHKRRAVQIIRDYCPKPLFLIGFLAALSDALTSPQIAR
QLGGNITSSIAVFTGLLASIIFGLLVIRLRRPVAHLIRNRPLAQRLKQPSLQESLRIFSGLWYWPIVLMVLVSAVNLIGI
GEDNQKALRCALLTTVLLIGAVFLSTVLQHLFKSRRAEAIQRSSAYKERFLSLLHALLRIVIAIAFIDILGRIWGVSLLD
FAQSSTVGRAISNALSSIGLIILVTWLLWVVLDTAIQEALKPPVSKRSARQPSTRVKTILPLLRNAIKIILVVICAITTM
ANLGINVAPLLAGAGVVGLAIGFGSQQLVQDVITGLFIIIEDTLSIGDWVVLDSGHAGTVEGLTIRTLRLRDGKGFVHSV
PFGQIKAVTNQSRQFAFAFFSVQFTYDTDVDKAIELIREAGDSIREDPFLKYNLQGPLDVFGVDKMDLNGVVLTAQFRTV
SGGQYAVSRAFNQRLKKLVDNSPWVHFAQTYPQQVLLPKRQEEEAPPAHSSVVLPEQVRTQ

Sequences:

>Translated_701_residues
MTRFRIAILLGALLLFGGNAVQAASLPGVPAASEEPAKPEPIVQGGLLGAISSGIDDVQDKLDLNEHLVDAWRLRADRAA
DEVDRLVNQPSNRSGWSVAGDFLMLSGVWLGTFAVLTVLGSVLGKRLREGRWLRTRQRSQDLLGYLLPYTLPALICLPLT
LYVSHFLSASVGRALALCFAYATSSGIFSTSMLLCVVVMFNVGHKRRAVQIIRDYCPKPLFLIGFLAALSDALTSPQIAR
QLGGNITSSIAVFTGLLASIIFGLLVIRLRRPVAHLIRNRPLAQRLKQPSLQESLRIFSGLWYWPIVLMVLVSAVNLIGI
GEDNQKALRCALLTTVLLIGAVFLSTVLQHLFKSRRAEAIQRSSAYKERFLSLLHALLRIVIAIAFIDILGRIWGVSLLD
FAQSSTVGRAISNALSSIGLIILVTWLLWVVLDTAIQEALKPPVSKRSARQPSTRVKTILPLLRNAIKIILVVICAITTM
ANLGINVAPLLAGAGVVGLAIGFGSQQLVQDVITGLFIIIEDTLSIGDWVVLDSGHAGTVEGLTIRTLRLRDGKGFVHSV
PFGQIKAVTNQSRQFAFAFFSVQFTYDTDVDKAIELIREAGDSIREDPFLKYNLQGPLDVFGVDKMDLNGVVLTAQFRTV
SGGQYAVSRAFNQRLKKLVDNSPWVHFAQTYPQQVLLPKRQEEEAPPAHSSVVLPEQVRTQ
>Mature_700_residues
TRFRIAILLGALLLFGGNAVQAASLPGVPAASEEPAKPEPIVQGGLLGAISSGIDDVQDKLDLNEHLVDAWRLRADRAAD
EVDRLVNQPSNRSGWSVAGDFLMLSGVWLGTFAVLTVLGSVLGKRLREGRWLRTRQRSQDLLGYLLPYTLPALICLPLTL
YVSHFLSASVGRALALCFAYATSSGIFSTSMLLCVVVMFNVGHKRRAVQIIRDYCPKPLFLIGFLAALSDALTSPQIARQ
LGGNITSSIAVFTGLLASIIFGLLVIRLRRPVAHLIRNRPLAQRLKQPSLQESLRIFSGLWYWPIVLMVLVSAVNLIGIG
EDNQKALRCALLTTVLLIGAVFLSTVLQHLFKSRRAEAIQRSSAYKERFLSLLHALLRIVIAIAFIDILGRIWGVSLLDF
AQSSTVGRAISNALSSIGLIILVTWLLWVVLDTAIQEALKPPVSKRSARQPSTRVKTILPLLRNAIKIILVVICAITTMA
NLGINVAPLLAGAGVVGLAIGFGSQQLVQDVITGLFIIIEDTLSIGDWVVLDSGHAGTVEGLTIRTLRLRDGKGFVHSVP
FGQIKAVTNQSRQFAFAFFSVQFTYDTDVDKAIELIREAGDSIREDPFLKYNLQGPLDVFGVDKMDLNGVVLTAQFRTVS
GGQYAVSRAFNQRLKKLVDNSPWVHFAQTYPQQVLLPKRQEEEAPPAHSSVVLPEQVRTQ

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=380, Percent_Identity=29.7368421052632, Blast_Score=118, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 76605; Mature: 76474

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFRIAILLGALLLFGGNAVQAASLPGVPAASEEPAKPEPIVQGGLLGAISSGIDDVQD
CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHCCCHHHHHHCCHHHHHH
KLDLNEHLVDAWRLRADRAADEVDRLVNQPSNRSGWSVAGDFLMLSGVWLGTFAVLTVLG
HHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVLGKRLREGRWLRTRQRSQDLLGYLLPYTLPALICLPLTLYVSHFLSASVGRALALCFA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YATSSGIFSTSMLLCVVVMFNVGHKRRAVQIIRDYCPKPLFLIGFLAALSDALTSPQIAR
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
QLGGNITSSIAVFTGLLASIIFGLLVIRLRRPVAHLIRNRPLAQRLKQPSLQESLRIFSG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHH
LWYWPIVLMVLVSAVNLIGIGEDNQKALRCALLTTVLLIGAVFLSTVLQHLFKSRRAEAI
HHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRSSAYKERFLSLLHALLRIVIAIAFIDILGRIWGVSLLDFAQSSTVGRAISNALSSIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILVTWLLWVVLDTAIQEALKPPVSKRSARQPSTRVKTILPLLRNAIKIILVVICAITTM
HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLGINVAPLLAGAGVVGLAIGFGSQQLVQDVITGLFIIIEDTLSIGDWVVLDSGHAGTV
HHCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
EGLTIRTLRLRDGKGFVHSVPFGQIKAVTNQSRQFAFAFFSVQFTYDTDVDKAIELIREA
CCEEEEEEEEECCCCCEECCCCHHHHHHHCCCHHEEEEEEEEEEEECCCHHHHHHHHHHH
GDSIREDPFLKYNLQGPLDVFGVDKMDLNGVVLTAQFRTVSGGQYAVSRAFNQRLKKLVD
CHHHCCCCCEEEECCCCCCEECCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
NSPWVHFAQTYPQQVLLPKRQEEEAPPAHSSVVLPEQVRTQ
CCCCEEHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
TRFRIAILLGALLLFGGNAVQAASLPGVPAASEEPAKPEPIVQGGLLGAISSGIDDVQD
CHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHCCCHHHHHHCCHHHHHH
KLDLNEHLVDAWRLRADRAADEVDRLVNQPSNRSGWSVAGDFLMLSGVWLGTFAVLTVLG
HHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVLGKRLREGRWLRTRQRSQDLLGYLLPYTLPALICLPLTLYVSHFLSASVGRALALCFA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YATSSGIFSTSMLLCVVVMFNVGHKRRAVQIIRDYCPKPLFLIGFLAALSDALTSPQIAR
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
QLGGNITSSIAVFTGLLASIIFGLLVIRLRRPVAHLIRNRPLAQRLKQPSLQESLRIFSG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHH
LWYWPIVLMVLVSAVNLIGIGEDNQKALRCALLTTVLLIGAVFLSTVLQHLFKSRRAEAI
HHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRSSAYKERFLSLLHALLRIVIAIAFIDILGRIWGVSLLDFAQSSTVGRAISNALSSIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILVTWLLWVVLDTAIQEALKPPVSKRSARQPSTRVKTILPLLRNAIKIILVVICAITTM
HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLGINVAPLLAGAGVVGLAIGFGSQQLVQDVITGLFIIIEDTLSIGDWVVLDSGHAGTV
HHCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
EGLTIRTLRLRDGKGFVHSVPFGQIKAVTNQSRQFAFAFFSVQFTYDTDVDKAIELIREA
CCEEEEEEEEECCCCCEECCCCHHHHHHHCCCHHEEEEEEEEEEEECCCHHHHHHHHHHH
GDSIREDPFLKYNLQGPLDVFGVDKMDLNGVVLTAQFRTVSGGQYAVSRAFNQRLKKLVD
CHHHCCCCCEEEECCCCCCEECCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
NSPWVHFAQTYPQQVLLPKRQEEEAPPAHSSVVLPEQVRTQ
CCCCEEHHHHCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]