| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77461260
Identifier: 77461260
GI number: 77461260
Start: 5676229
End: 5676987
Strand: Reverse
Name: 77461260
Synonym: Pfl01_5039
Alternate gene names: NA
Gene position: 5676987-5676229 (Counterclockwise)
Preceding gene: 77461261
Following gene: 77461254
Centisome position: 88.17
GC content: 64.43
Gene sequence:
>759_bases ATGACGGCTAGAAGCGAAAGCATTCAAATCGACATTGATGATGAACAGATGAGCGGGACGTTCCTCAGTCCCAAATCGAA AGTCCCCGGCGTGTTGTTCGTGCACGGCTGGGGCGGCAGTCAGGAGCGCGATCTGGAGCGGGCCAAAGGCATCGCCGGCC TGGGTTGCGTGTGCCTGACGTTCGACCTGCGCGGGCACACTGGCGGCACCGGCATTCCGCTGAGCCGGGTCACTCGCGAA GACAACCTGCGTGACTTGCTGGCGGCCTACGACCGGTTGCTCGCCCATCCGGCGCTGGACACTTCGGCCATTGCGGTGGT GGGCACCAGCTATGGCGGTTACCTCGCTTCAATTCTGACCTCGCTGCGCCCGGTGCGCTGGCTGGCGCTGCGGGTGCCGG CGCTGTACCGCGACGAGCAATGGCACACGCCCAAGCGCGATCTGGACAAGGCCGACCTGCGCGATTATCGCGGCACCCTG GTGCGCGCCGACAGCAACCGCGCCTTGCACGCCTGCTCGCAATTCACTGGCGACGTGCTGCTGGTGCAGTCGGAAACCGA CGACTACGTGCCCCACGCGACGATCATGAGTTACCGCGCCGCGTGTCAGCAGACTCACTCGCTGACCCACCGCATCATCG ATGGCGCCGACCATGCCCTGAGCGATCCGACCTCGCAGCAGGCCTACACCTCGATCCTGGTTGACTGGATCACCGAGATG GTGGTGGGCGAGCGGTTGAGCATCATTCAGTCCCGCTGA
Upstream 100 bases:
>100_bases ACCTATACCGATCAGGCCCTGCCGGCGGATGCCATCGAGGTGTATCGCGGGCCGGCCGAGAACAGCGACTTTCTCCTCAA ATACGTAACGGTCAAATCCT
Downstream 100 bases:
>100_bases TCAGATTTGGGTTTCTTCTCGATCCGCAATGCCTTGGCCTTGGCTTCCACCACCAGGTACATCAGCACTGTGATCAGCAG CGGCAGCAGGAAATAGATTG
Product: hypothetical protein
Products: NA
Alternate protein names: PGAP1 Family Protein; Peptidase S9 Family Protein; Hydrolase Or Peptidase; Cinnamoyl Ester Hydrolase; Prolyl Oligopeptidase Family
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MTARSESIQIDIDDEQMSGTFLSPKSKVPGVLFVHGWGGSQERDLERAKGIAGLGCVCLTFDLRGHTGGTGIPLSRVTRE DNLRDLLAAYDRLLAHPALDTSAIAVVGTSYGGYLASILTSLRPVRWLALRVPALYRDEQWHTPKRDLDKADLRDYRGTL VRADSNRALHACSQFTGDVLLVQSETDDYVPHATIMSYRAACQQTHSLTHRIIDGADHALSDPTSQQAYTSILVDWITEM VVGERLSIIQSR
Sequences:
>Translated_252_residues MTARSESIQIDIDDEQMSGTFLSPKSKVPGVLFVHGWGGSQERDLERAKGIAGLGCVCLTFDLRGHTGGTGIPLSRVTRE DNLRDLLAAYDRLLAHPALDTSAIAVVGTSYGGYLASILTSLRPVRWLALRVPALYRDEQWHTPKRDLDKADLRDYRGTL VRADSNRALHACSQFTGDVLLVQSETDDYVPHATIMSYRAACQQTHSLTHRIIDGADHALSDPTSQQAYTSILVDWITEM VVGERLSIIQSR >Mature_251_residues TARSESIQIDIDDEQMSGTFLSPKSKVPGVLFVHGWGGSQERDLERAKGIAGLGCVCLTFDLRGHTGGTGIPLSRVTRED NLRDLLAAYDRLLAHPALDTSAIAVVGTSYGGYLASILTSLRPVRWLALRVPALYRDEQWHTPKRDLDKADLRDYRGTLV RADSNRALHACSQFTGDVLLVQSETDDYVPHATIMSYRAACQQTHSLTHRIIDGADHALSDPTSQQAYTSILVDWITEMV VGERLSIIQSR
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27805; Mature: 27674
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00708 PRO_ENDOPEP_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARSESIQIDIDDEQMSGTFLSPKSKVPGVLFVHGWGGSQERDLERAKGIAGLGCVCLT CCCCCCEEEEEECHHHCCCCEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEE FDLRGHTGGTGIPLSRVTREDNLRDLLAAYDRLLAHPALDTSAIAVVGTSYGGYLASILT EEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHH SLRPVRWLALRVPALYRDEQWHTPKRDLDKADLRDYRGTLVRADSNRALHACSQFTGDVL HHCHHHHHHHHCCHHHCCCCCCCCHHCCCHHHHHHHCCEEEEECCCCHHHHHHHCCCCEE LVQSETDDYVPHATIMSYRAACQQTHSLTHRIIDGADHALSDPTSQQAYTSILVDWITEM EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHH VVGERLSIIQSR HHHHHHHHHCCC >Mature Secondary Structure TARSESIQIDIDDEQMSGTFLSPKSKVPGVLFVHGWGGSQERDLERAKGIAGLGCVCLT CCCCCEEEEEECHHHCCCCEECCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEEE FDLRGHTGGTGIPLSRVTREDNLRDLLAAYDRLLAHPALDTSAIAVVGTSYGGYLASILT EEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHH SLRPVRWLALRVPALYRDEQWHTPKRDLDKADLRDYRGTLVRADSNRALHACSQFTGDVL HHCHHHHHHHHCCHHHCCCCCCCCHHCCCHHHHHHHCCEEEEECCCCHHHHHHHCCCCEE LVQSETDDYVPHATIMSYRAACQQTHSLTHRIIDGADHALSDPTSQQAYTSILVDWITEM EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHH VVGERLSIIQSR HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA