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The map label for this gene is ybeY [C]

Identifier: 77461173

GI number: 77461173

Start: 5579935

End: 5580429

Strand: Direct

Name: ybeY [C]

Synonym: Pfl01_4952

Alternate gene names: 77461173

Gene position: 5579935-5580429 (Clockwise)

Preceding gene: 77461172

Following gene: 77461174

Centisome position: 86.67

GC content: 57.78

Gene sequence:

>495_bases
ATGCTTGAGCTTGACCTGCAAATCGCGACCGAAGCGCCTGCGCCGACCGAAGCCGAGTTCCGCCAATGGTGCGAACTGGC
CCTGCGCCAGCGCACAGCCGACTCGGAAATGACCATTCGTCTGGTCGATGAGGACGAAGGCCGCGAGCTGAATCACACCT
GGCGGCACAAGGATTACGCGACCAACGTCCTGTCCTTTCCCGCCGAAGTGCCCGACGAGTTCCTAGACATCCCGCTGCTG
GGAGATCTGGTGATCTGCGTGGCCGTGGTTGAGCGTGAGGCCACCGAACAGGGCAAGGAACTAAAGGCCCACTGGGCACA
TCTGGTCATTCACGGCTGCTTGCATCTGCTTGGTTACGACCATATAGATGACGAGGAAGCCGAGGAAATGGAAGCACTGG
AACGCGAGTTGCTTGCCGAATTGGGTTATCCCGATCCGTACGCGGACGACGAAACCGAAACATCCCCTACTGTTACAACA
AAGGATTCAGAGTAA

Upstream 100 bases:

>100_bases
AAAGACGTGGTGCGCCATCCGTTGGTGCAACGCATCGTCGAAGCCTACGAGCGCTTCGAGACGCGTTTGGCCGATGAAGC
GCCAAAGGACACCCGCCACG

Downstream 100 bases:

>100_bases
TCGCTATGAGCGAAGATCGATCGAGCAACGGGCAAAAGTCATGGCTGGGTAAACTGACCCAGGCTTTTGCCCACGAGCCG
AAGAACCGCCAGGAGCTGCT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MLELDLQIATEAPAPTEAEFRQWCELALRQRTADSEMTIRLVDEDEGRELNHTWRHKDYATNVLSFPAEVPDEFLDIPLL
GDLVICVAVVEREATEQGKELKAHWAHLVIHGCLHLLGYDHIDDEEAEEMEALERELLAELGYPDPYADDETETSPTVTT
KDSE

Sequences:

>Translated_164_residues
MLELDLQIATEAPAPTEAEFRQWCELALRQRTADSEMTIRLVDEDEGRELNHTWRHKDYATNVLSFPAEVPDEFLDIPLL
GDLVICVAVVEREATEQGKELKAHWAHLVIHGCLHLLGYDHIDDEEAEEMEALERELLAELGYPDPYADDETETSPTVTT
KDSE
>Mature_164_residues
MLELDLQIATEAPAPTEAEFRQWCELALRQRTADSEMTIRLVDEDEGRELNHTWRHKDYATNVLSFPAEVPDEFLDIPLL
GDLVICVAVVEREATEQGKELKAHWAHLVIHGCLHLLGYDHIDDEEAEEMEALERELLAELGYPDPYADDETETSPTVTT
KDSE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=146, Percent_Identity=59.5890410958904, Blast_Score=151, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PSEPF (Q3K6B5)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_350680.1
- ProteinModelPortal:   Q3K6B5
- SMR:   Q3K6B5
- STRING:   Q3K6B5
- GeneID:   3714035
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_4952
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   PRK00016
- BioCyc:   PFLU205922:PFL_4952-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18686; Mature: 18686

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELDLQIATEAPAPTEAEFRQWCELALRQRTADSEMTIRLVDEDEGRELNHTWRHKDYA
CEEECEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
TNVLSFPAEVPDEFLDIPLLGDLVICVAVVEREATEQGKELKAHWAHLVIHGCLHLLGYD
HHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HIDDEEAEEMEALERELLAELGYPDPYADDETETSPTVTTKDSE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure
MLELDLQIATEAPAPTEAEFRQWCELALRQRTADSEMTIRLVDEDEGRELNHTWRHKDYA
CEEECEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
TNVLSFPAEVPDEFLDIPLLGDLVICVAVVEREATEQGKELKAHWAHLVIHGCLHLLGYD
HHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HIDDEEAEEMEALERELLAELGYPDPYADDETETSPTVTTKDSE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA