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The map label for this gene is cydA [H]

Identifier: 77461114

GI number: 77461114

Start: 5516505

End: 5517941

Strand: Reverse

Name: cydA [H]

Synonym: Pfl01_4893

Alternate gene names: 77461114

Gene position: 5517941-5516505 (Counterclockwise)

Preceding gene: 77461116

Following gene: 77461113

Centisome position: 85.7

GC content: 59.78

Gene sequence:

>1437_bases
ATGTTCGGTTTAGAGGCCCTGGATCTCGCCCGAATTCAGTTCGCATTCACCATCTCGTTCCACATCCTGTTCCCGGCGAT
CACCATCGGTCTTGCGAGCTATCTCGCGGTGCTGGAAGGCCTGTGGCTGAAAACCGGCAACGACACCTACCGTGATCTTT
ATCACTTCTGGTCGAAGATCTTTGCCGTCAACTTCGGCATGGGCGTGGTCTCGGGCCTGGTCATGGCTTACCAGTTCGGC
ACCAACTGGAGTCGCTTCTCGGACTTCGCCGGCTCCGTTACCGGGCCGTTGCTGACGTATGAAGTGCTCACGGCGTTCTT
CCTCGAAGCCGGTTTCCTCGGGGTGATGCTGTTCGGCTGGAACAAGGTCGGGCGCGGCCTGCACTTTTTCTCCACGGTGA
TGGTCGCCATCGGCACACTGATTTCGACCTTCTGGATTCTCGCTTCCAACAGCTGGATGCAGACCCCGCAGGGCTTCGAG
ATCGTCAACGGTCAGGTCATTCCAACCGACTGGCTGGCAATTGTCTTCAACCCATCGTTCCCCTATCGCCTGATGCACAT
GGCGACCGCAGCGTTCGTCGCAACGGCGTTCTTCGTCGGTTCGTCAGCGGCCTGGCACCTGCTGCGCGGCAAGGACAACC
CGGCGATCCGCACCATGCTGTCGATGGCGATGTGGATGGCGTTGATCGTTGCGCCGATCCAGGCTGTCATCGGCGACTTC
CACGGCCTCAACACCCTCGAGCATCAGCCAGCGAAAATCGCTGCGATCGAAGGCCACTGGGAAAACGTCGGCGACGAAGC
GACACCGCTGATTCTGTTCGGCTGGCCGGACATGAAGGAAGAAAAAACCAAGTTCGCTGTCGAGATTCCATACCTCGGCA
GCCTGATCCTGACCCACTCGCTGGACAAGCAAGTCCCGGCGCTCAAGGAGTTCCCGCCAGAAGACCGGCCGAATTCCACC
ATCGTGTTCTGGTCGTTCCGGATCATGGTCGGCCTCGGCTTCCTGATGATCTTCACCGGTCTGTGGAGTTTGTGGCTGCG
CAAGCGTGACTCGCTCTACACCTCGCGGCCGTTCCTGTACCTGGCGTTGTGGATGGGGCCGTCCGGTCTGATCGCGATCC
TGGCGGGCTGGTTCACCACTGAAATCGGTCGTCAGCCGTGGGTGGTCTACGGGCTGATGCGCACGGCGGACGCGTCTTCC
AACCACAGTTTCATGCAGATGAGCATCACGCTGATCATGTTCGTGGTGGTGTACTTCGCGCTGTTCGGTGCGGGTCTGGG
CTACATGATGCGTCTGGTGCGCAAAGGACCGAAGACCGACGAAGGCAAGGAAACCAACGAAGGTGGTCCTGGCCAGAAAC
GTACGCCGGCCCGTCCGTTGTCCGCTGCCGACGACGATGGTGCCGAACACGACCGCAGCCTGACCAAGGAGATTTGA

Upstream 100 bases:

>100_bases
GTAAAAAGAAGAACGAATCCGAGTTCGCCGCACTCCATACCCGTGGGGGCAGTGGTTCAAGGCCGCCAGTCCTGGACCGT
TATCTGATAGAGGAAAGCTT

Downstream 100 bases:

>100_bases
GTCATGGGTATTGATCTTCCGCTGATCTGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGTTT
CGATCTGGGGATCGGGATTC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MFGLEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTGNDTYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSRFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGRGLHFFSTVMVAIGTLISTFWILASNSWMQTPQGFE
IVNGQVIPTDWLAIVFNPSFPYRLMHMATAAFVATAFFVGSSAAWHLLRGKDNPAIRTMLSMAMWMALIVAPIQAVIGDF
HGLNTLEHQPAKIAAIEGHWENVGDEATPLILFGWPDMKEEKTKFAVEIPYLGSLILTHSLDKQVPALKEFPPEDRPNST
IVFWSFRIMVGLGFLMIFTGLWSLWLRKRDSLYTSRPFLYLALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASS
NHSFMQMSITLIMFVVVYFALFGAGLGYMMRLVRKGPKTDEGKETNEGGPGQKRTPARPLSAADDDGAEHDRSLTKEI

Sequences:

>Translated_478_residues
MFGLEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTGNDTYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSRFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGRGLHFFSTVMVAIGTLISTFWILASNSWMQTPQGFE
IVNGQVIPTDWLAIVFNPSFPYRLMHMATAAFVATAFFVGSSAAWHLLRGKDNPAIRTMLSMAMWMALIVAPIQAVIGDF
HGLNTLEHQPAKIAAIEGHWENVGDEATPLILFGWPDMKEEKTKFAVEIPYLGSLILTHSLDKQVPALKEFPPEDRPNST
IVFWSFRIMVGLGFLMIFTGLWSLWLRKRDSLYTSRPFLYLALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASS
NHSFMQMSITLIMFVVVYFALFGAGLGYMMRLVRKGPKTDEGKETNEGGPGQKRTPARPLSAADDDGAEHDRSLTKEI
>Mature_478_residues
MFGLEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTGNDTYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSRFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGRGLHFFSTVMVAIGTLISTFWILASNSWMQTPQGFE
IVNGQVIPTDWLAIVFNPSFPYRLMHMATAAFVATAFFVGSSAAWHLLRGKDNPAIRTMLSMAMWMALIVAPIQAVIGDF
HGLNTLEHQPAKIAAIEGHWENVGDEATPLILFGWPDMKEEKTKFAVEIPYLGSLILTHSLDKQVPALKEFPPEDRPNST
IVFWSFRIMVGLGFLMIFTGLWSLWLRKRDSLYTSRPFLYLALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASS
NHSFMQMSITLIMFVVVYFALFGAGLGYMMRLVRKGPKTDEGKETNEGGPGQKRTPARPLSAADDDGAEHDRSLTKEI

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=524, Percent_Identity=30.3435114503817, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1787212, Length=318, Percent_Identity=39.622641509434, Blast_Score=238, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53365; Mature: 53365

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGLEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTGNDTYRDLYHFWSKI
CCCCCHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSRFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
NKVGRGLHFFSTVMVAIGTLISTFWILASNSWMQTPQGFEIVNGQVIPTDWLAIVFNPSF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCEEEEEECCCC
PYRLMHMATAAFVATAFFVGSSAAWHLLRGKDNPAIRTMLSMAMWMALIVAPIQAVIGDF
CHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLEHQPAKIAAIEGHWENVGDEATPLILFGWPDMKEEKTKFAVEIPYLGSLILTHS
CCCCCCCCCCCEEEEEECCHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHHH
LDKQVPALKEFPPEDRPNSTIVFWSFRIMVGLGFLMIFTGLWSLWLRKRDSLYTSRPFLY
HHHCCCHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASSNHSFMQMSITLIMFVVVYFA
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LFGAGLGYMMRLVRKGPKTDEGKETNEGGPGQKRTPARPLSAADDDGAEHDRSLTKEI
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MFGLEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTGNDTYRDLYHFWSKI
CCCCCHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSRFSDFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
NKVGRGLHFFSTVMVAIGTLISTFWILASNSWMQTPQGFEIVNGQVIPTDWLAIVFNPSF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCEEEEEECCCC
PYRLMHMATAAFVATAFFVGSSAAWHLLRGKDNPAIRTMLSMAMWMALIVAPIQAVIGDF
CHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLEHQPAKIAAIEGHWENVGDEATPLILFGWPDMKEEKTKFAVEIPYLGSLILTHS
CCCCCCCCCCCEEEEEECCHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHHH
LDKQVPALKEFPPEDRPNSTIVFWSFRIMVGLGFLMIFTGLWSLWLRKRDSLYTSRPFLY
HHHCCCHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASSNHSFMQMSITLIMFVVVYFA
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LFGAGLGYMMRLVRKGPKTDEGKETNEGGPGQKRTPARPLSAADDDGAEHDRSLTKEI
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]