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The map label for this gene is cydB [H]

Identifier: 77461113

GI number: 77461113

Start: 5515494

End: 5516501

Strand: Reverse

Name: cydB [H]

Synonym: Pfl01_4892

Alternate gene names: 77461113

Gene position: 5516501-5515494 (Counterclockwise)

Preceding gene: 77461114

Following gene: 77461112

Centisome position: 85.68

GC content: 59.52

Gene sequence:

>1008_bases
ATGGGTATTGATCTTCCGCTGATCTGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGTTTCGA
TCTGGGGATCGGGATTCTCTTTCCGTTCATCCCCGGCAAGACCGACCGCGACGTGATGATGAACACCGTCGCCCCGGTGT
GGGACGGCAACGAAACCTGGCTGGTACTGGGCGGCGCTGCGTTGTTCGGCGCCTTCCCGTTGGCTTATTCAGTGGTGTTG
TCGGCGCTGTACCTGCCGCTGATTTTCATGCTGATCGGGCTGATCTTCCGTGGCGTGGCGTTCGAGTTCCGCTTCAAGGC
CAAGGACGACAAGCGTCACCTGTGGGACAAGGCATTCATCGGTGGTTCGATTGCCGCAACGTTTTTCCAGGGTGTGGCGC
TGGGCGCGTTCATCGATGGTCTGCCAGTGGTCAACCGGCAATATGCCGGCGGTTCACTGGACTGGCTGACGCCGTTCACG
CTGTTCTGCGGCGCCGCACTGGTGGTGGCGTATGCCTTGCTCGGCTGCACCTGGCTGATCATGAAGACCGAAGGCAAGTT
GCAGGAACAGATGCATGACCTGGCGCGACCTTTGGCCTTCGTGCTGTTGGCGGTGATCGGTGTCGTCAGTCTGTGGACGC
CGCTGGCCCATCCGGAAATTGCGACGCGCTGGTTCAGCATGCCGAATCTGTTCTGGTTCATGCCGGTGCCGATTCTGGTG
CTGGTGACGATGTACGGTCTGATTCGCGCGGTGGCACGCAATGCCAACTACATGCCGTTCCTGCTGACCCTGGTGCTGAT
CTTCCTCGGCTACAGCGGTCTGGGCATCAGCCTGTGGCCGAACATCGTGCCGCCGTCGATCTCGATCTGGGACGCCGCCG
CACCACCGCAAAGCCAGGGCTTCATGCTGGTGGGCACGCTGTTCATCATCCCGTTCATCCTGGGTTACACCTTCTGGAGC
TATTACGTGTTCCGCGGCAAGGTCACCCATGAAGACGGTTATCACTAA

Upstream 100 bases:

>100_bases
AGGTGGTCCTGGCCAGAAACGTACGCCGGCCCGTCCGTTGTCCGCTGCCGACGACGATGGTGCCGAACACGACCGCAGCC
TGACCAAGGAGATTTGAGTC

Downstream 100 bases:

>100_bases
GGGTGATCACGATGGCGCCGACAGCGGCGCCATCTCCCTCAACCGGAGGATGCAAGCATGACCGGCAAACATTCCCTGCA
CGACATTGAAGAAGCCGAAA

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MGIDLPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTDRDVMMNTVAPVWDGNETWLVLGGAALFGAFPLAYSVVL
SALYLPLIFMLIGLIFRGVAFEFRFKAKDDKRHLWDKAFIGGSIAATFFQGVALGAFIDGLPVVNRQYAGGSLDWLTPFT
LFCGAALVVAYALLGCTWLIMKTEGKLQEQMHDLARPLAFVLLAVIGVVSLWTPLAHPEIATRWFSMPNLFWFMPVPILV
LVTMYGLIRAVARNANYMPFLLTLVLIFLGYSGLGISLWPNIVPPSISIWDAAAPPQSQGFMLVGTLFIIPFILGYTFWS
YYVFRGKVTHEDGYH

Sequences:

>Translated_335_residues
MGIDLPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTDRDVMMNTVAPVWDGNETWLVLGGAALFGAFPLAYSVVL
SALYLPLIFMLIGLIFRGVAFEFRFKAKDDKRHLWDKAFIGGSIAATFFQGVALGAFIDGLPVVNRQYAGGSLDWLTPFT
LFCGAALVVAYALLGCTWLIMKTEGKLQEQMHDLARPLAFVLLAVIGVVSLWTPLAHPEIATRWFSMPNLFWFMPVPILV
LVTMYGLIRAVARNANYMPFLLTLVLIFLGYSGLGISLWPNIVPPSISIWDAAAPPQSQGFMLVGTLFIIPFILGYTFWS
YYVFRGKVTHEDGYH
>Mature_334_residues
GIDLPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTDRDVMMNTVAPVWDGNETWLVLGGAALFGAFPLAYSVVLS
ALYLPLIFMLIGLIFRGVAFEFRFKAKDDKRHLWDKAFIGGSIAATFFQGVALGAFIDGLPVVNRQYAGGSLDWLTPFTL
FCGAALVVAYALLGCTWLIMKTEGKLQEQMHDLARPLAFVLLAVIGVVSLWTPLAHPEIATRWFSMPNLFWFMPVPILVL
VTMYGLIRAVARNANYMPFLLTLVLIFLGYSGLGISLWPNIVPPSISIWDAAAPPQSQGFMLVGTLFIIPFILGYTFWSY
YVFRGKVTHEDGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=29.9727520435967, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787213, Length=365, Percent_Identity=30.4109589041096, Blast_Score=145, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37197; Mature: 37066

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIDLPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTDRDVMMNTVAPVWDGNETW
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEE
LVLGGAALFGAFPLAYSVVLSALYLPLIFMLIGLIFRGVAFEFRFKAKDDKRHLWDKAFI
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHC
GGSIAATFFQGVALGAFIDGLPVVNRQYAGGSLDWLTPFTLFCGAALVVAYALLGCTWLI
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
MKTEGKLQEQMHDLARPLAFVLLAVIGVVSLWTPLAHPEIATRWFSMPNLFWFMPVPILV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
LVTMYGLIRAVARNANYMPFLLTLVLIFLGYSGLGISLWPNIVPPSISIWDAAAPPQSQG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
FMLVGTLFIIPFILGYTFWSYYVFRGKVTHEDGYH
CHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
>Mature Secondary Structure 
GIDLPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTDRDVMMNTVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEE
LVLGGAALFGAFPLAYSVVLSALYLPLIFMLIGLIFRGVAFEFRFKAKDDKRHLWDKAFI
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHC
GGSIAATFFQGVALGAFIDGLPVVNRQYAGGSLDWLTPFTLFCGAALVVAYALLGCTWLI
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
MKTEGKLQEQMHDLARPLAFVLLAVIGVVSLWTPLAHPEIATRWFSMPNLFWFMPVPILV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
LVTMYGLIRAVARNANYMPFLLTLVLIFLGYSGLGISLWPNIVPPSISIWDAAAPPQSQG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
FMLVGTLFIIPFILGYTFWSYYVFRGKVTHEDGYH
CHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]