Click here to switch to the map view.

The map label for this gene is ybdD [H]

Identifier: 77461103

GI number: 77461103

Start: 5505521

End: 5505718

Strand: Reverse

Name: ybdD [H]

Synonym: Pfl01_4882

Alternate gene names: 77461103

Gene position: 5505718-5505521 (Counterclockwise)

Preceding gene: 77461104

Following gene: 77461102

Centisome position: 85.51

GC content: 57.58

Gene sequence:

>198_bases
ATGTTCAATGACCTCAGTCGCCTCGGTAAATACCTCGGTCAGGCCGCGCGCCTGATGGTCGGCATGCCCGACTACGACAC
CTACGTCGAGCATATGCAGACCAAACACCCGGACAAACCGGTGATGAGCTATGAGATGTTCTTTCGCGAACGTCAGGAAG
CCCGTTACGGTGGCAAGGGTGGGCCGAAGTGCTGCTGA

Upstream 100 bases:

>100_bases
TGCGCTCAAGGTCGGCATCGCCGCCTGGGGCAAAAAAGAGCGTACGGACAAAGAATCGCCATTCCAGGCCCTGCCGGACG
CGTAACCAGAGGATTGCAGC

Downstream 100 bases:

>100_bases
ATCGCTGATCGCGGTTCACCAGAGATAGGTGGGAGCAGGTCTTTCGGCCTGCTCCCATTTTTATTTGTGCAATTGAAGGA
GATCGAGTTTGTCTTCTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MFNDLSRLGKYLGQAARLMVGMPDYDTYVEHMQTKHPDKPVMSYEMFFRERQEARYGGKGGPKCC

Sequences:

>Translated_65_residues
MFNDLSRLGKYLGQAARLMVGMPDYDTYVEHMQTKHPDKPVMSYEMFFRERQEARYGGKGGPKCC
>Mature_65_residues
MFNDLSRLGKYLGQAARLMVGMPDYDTYVEHMQTKHPDKPVMSYEMFFRERQEARYGGKGGPKCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=70.7692307692308, Blast_Score=106, Evalue=2e-25,
Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=68.6567164179104, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7568; Mature: 7568

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
9.2 %Met     (Translated Protein)
12.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
9.2 %Met     (Mature Protein)
12.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNDLSRLGKYLGQAARLMVGMPDYDTYVEHMQTKHPDKPVMSYEMFFRERQEARYGGKG
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
GPKCC
CCCCC
>Mature Secondary Structure
MFNDLSRLGKYLGQAARLMVGMPDYDTYVEHMQTKHPDKPVMSYEMFFRERQEARYGGKG
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
GPKCC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]