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The map label for this gene is truC [H]

Identifier: 77461011

GI number: 77461011

Start: 5405652

End: 5405987

Strand: Reverse

Name: truC [H]

Synonym: Pfl01_4790

Alternate gene names: 77461011

Gene position: 5405987-5405652 (Counterclockwise)

Preceding gene: 77461012

Following gene: 77461009

Centisome position: 83.96

GC content: 57.14

Gene sequence:

>336_bases
ATGGACAGTCGTTTCTCCAAGGTCGCCGATCAATTGCTGTTGATCGAGCGTGAACTGCGCGCCCAGGGCTGGTGGGATGA
CGTCCAGCCCTCGGTCGAAGCCCTGAGCAGCGTCGAGCCGTTTTCGGTCGACACCCTCGATTTCGAGCAGTGGCTGCAAT
GGATCTTCCTGCCGCGGATGAAGATTATTCTTGAGCAGAATCTGCCATTGCCCAATGCCTCGGGCATTCAGGAAATGGCT
GAGATGGTCTTCGCCCAGCGCAATCTGCAGGGCAAGGATCGGCAGCTTCAGGTGTTGCTCAAAGAGTTCGACCTGCTGAT
CACCGCTTCACGCTGA

Upstream 100 bases:

>100_bases
TGCAGGCCAGTCTGTGGGAATTGATCGCTCAGGCACGTGAGAAGCAAGGTGATTCCGCCGGCGCCACTCTGGCCCGTCAG
AAGGCCAAGGTTTCGCTGTG

Downstream 100 bases:

>100_bases
ACCGGGAGCTGCCAGTCGTTACTGGCAGTTTTCCGCTATCTGTTTCTTTGCCTCTTCAGTACGTTGCTGGCGCTGCTCGT
CATTCAGCCGCCGCAATTCT

Product: hypothetical protein

Products: NA

Alternate protein names: tRNA pseudouridylate synthase C; tRNA-uridine isomerase C [H]

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MDSRFSKVADQLLLIERELRAQGWWDDVQPSVEALSSVEPFSVDTLDFEQWLQWIFLPRMKIILEQNLPLPNASGIQEMA
EMVFAQRNLQGKDRQLQVLLKEFDLLITASR

Sequences:

>Translated_111_residues
MDSRFSKVADQLLLIERELRAQGWWDDVQPSVEALSSVEPFSVDTLDFEQWLQWIFLPRMKIILEQNLPLPNASGIQEMA
EMVFAQRNLQGKDRQLQVLLKEFDLLITASR
>Mature_111_residues
MDSRFSKVADQLLLIERELRAQGWWDDVQPSVEALSSVEPFSVDTLDFEQWLQWIFLPRMKIILEQNLPLPNASGIQEMA
EMVFAQRNLQGKDRQLQVLLKEFDLLITASR

Specific function: Responsible for synthesis of pseudouridine from uracil- 65 in transfer RNAs [H]

COG id: COG3098

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yqcC in the N-terminal section [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007384
- InterPro:   IPR020103
- InterPro:   IPR006224
- InterPro:   IPR006145 [H]

Pfam domain/function: PF04287 DUF446; PF00849 PseudoU_synth_2 [H]

EC number: NA

Molecular weight: Translated: 12961; Mature: 12961

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRFSKVADQLLLIERELRAQGWWDDVQPSVEALSSVEPFSVDTLDFEQWLQWIFLPRM
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
KIILEQNLPLPNASGIQEMAEMVFAQRNLQGKDRQLQVLLKEFDLLITASR
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDSRFSKVADQLLLIERELRAQGWWDDVQPSVEALSSVEPFSVDTLDFEQWLQWIFLPRM
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
KIILEQNLPLPNASGIQEMAEMVFAQRNLQGKDRQLQVLLKEFDLLITASR
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA