| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is hemH
Identifier: 77460951
GI number: 77460951
Start: 5335928
End: 5336953
Strand: Reverse
Name: hemH
Synonym: Pfl01_4730
Alternate gene names: 77460951
Gene position: 5336953-5335928 (Counterclockwise)
Preceding gene: 77460952
Following gene: 77460948
Centisome position: 82.89
GC content: 61.11
Gene sequence:
>1026_bases ATGACCGATCACGCCTTGCTTCTGGTCAACCTGGGTTCGCCGGCCTCCACTTCGGTGGCCGACGTGCGCCGCTATCTCAA TCAATTCCTGATGGATCCTTACGTGATCGACCTGCCGTGGCCGGTGCGGCGTCTGCTGGTGTCGCTGATCCTGATCAAGC GCCCCGAGCAGTCGGCCCACGCCTACGCCTCGATCTGGTGGGATGAAGGCTCGCCGCTGGTGGTCCTCAGTCGTCGCCTG CAGCAGCAGATGAAGGCGCAATGGACCCACGGCCCGGTTGAGCTGGCCATGCGTTACGGCGAGCCGTCCATCGAGACAAA TCTGCTGAAACTGGTCGCGGCGGGACACAAACGCATCACCCTCGCGCCGCTTTATCCACAGTTTGCCGACAGCACCACGA CCACCGTGATCGAAGAAGCCAAGCGTGTGGTGCGCGAGAAAAAACTCGATGTGCAGCTGTCGGTGTTGCAGCCGTTCTAC GATCAGCCGGAATACCTCGACGCGCTGGTGGCGAGCGCCAGACCGCACTTGCAGCAGGATTACGATCACCTGTTGCTGAG CTTCCATGGTTTGCCGGAGCGGCACCTGACCAAGCTTGACCCGACCGGTAACCATTGCTTCAAGAATGAAGATTGCTGCA AGAATGCTTCGGCTGCTGTATTGGCCACCTGTTATCGCGCCCAGTGCCTGCGCACAGCGGCGCTGTTCGCAGAACGCATG GGCCTGCCGGACGGCAAATGGTCGGTGTCGTTTCAGTCGCGGCTGGGCCGGGCGAAATGGATCGAACCCTACACCGAAGC GCGGCTGGATGAGCTGGCCAAAAGTGGCGTGAAGAAGATTCTGGTGATGTGCCCGGCGTTTGTCGCCGATTGCATCGAGA CCCTGGAAGAGATCGGCGATCGCGGCAAGGAGCAGTTCCGCGAGGCGGGGGGAGAAGAGTTGGTGCTGGTGCCGTGTCTG AATGACGACCCGCAATGGGCGAAGGCGTTGGCAACGTTGTGTGAACGGGCGCCATTGGCCCTCTAA
Upstream 100 bases:
>100_bases ATGCCCAAGCGCTTGCTGGAAGCGGGATTCACTTTCCGGTTCACGGATTTACGCGCGGCCCTGGACGATCTTTCCAGCCG CCTCTGAAATAGGACGTTGC
Downstream 100 bases:
>100_bases AAGCATCGCCAGCAGGCTTGCTCCCACAGGAAAGCGCATTTCAATGTGGGAGCCAGCCTGCTGGCGATAGCGGTCTTTCA GGCGATGAAGCTAAGGGCTT
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MTDHALLLVNLGSPASTSVADVRRYLNQFLMDPYVIDLPWPVRRLLVSLILIKRPEQSAHAYASIWWDEGSPLVVLSRRL QQQMKAQWTHGPVELAMRYGEPSIETNLLKLVAAGHKRITLAPLYPQFADSTTTTVIEEAKRVVREKKLDVQLSVLQPFY DQPEYLDALVASARPHLQQDYDHLLLSFHGLPERHLTKLDPTGNHCFKNEDCCKNASAAVLATCYRAQCLRTAALFAERM GLPDGKWSVSFQSRLGRAKWIEPYTEARLDELAKSGVKKILVMCPAFVADCIETLEEIGDRGKEQFREAGGEELVLVPCL NDDPQWAKALATLCERAPLAL
Sequences:
>Translated_341_residues MTDHALLLVNLGSPASTSVADVRRYLNQFLMDPYVIDLPWPVRRLLVSLILIKRPEQSAHAYASIWWDEGSPLVVLSRRL QQQMKAQWTHGPVELAMRYGEPSIETNLLKLVAAGHKRITLAPLYPQFADSTTTTVIEEAKRVVREKKLDVQLSVLQPFY DQPEYLDALVASARPHLQQDYDHLLLSFHGLPERHLTKLDPTGNHCFKNEDCCKNASAAVLATCYRAQCLRTAALFAERM GLPDGKWSVSFQSRLGRAKWIEPYTEARLDELAKSGVKKILVMCPAFVADCIETLEEIGDRGKEQFREAGGEELVLVPCL NDDPQWAKALATLCERAPLAL >Mature_340_residues TDHALLLVNLGSPASTSVADVRRYLNQFLMDPYVIDLPWPVRRLLVSLILIKRPEQSAHAYASIWWDEGSPLVVLSRRLQ QQMKAQWTHGPVELAMRYGEPSIETNLLKLVAAGHKRITLAPLYPQFADSTTTTVIEEAKRVVREKKLDVQLSVLQPFYD QPEYLDALVASARPHLQQDYDHLLLSFHGLPERHLTKLDPTGNHCFKNEDCCKNASAAVLATCYRAQCLRTAALFAERMG LPDGKWSVSFQSRLGRAKWIEPYTEARLDELAKSGVKKILVMCPAFVADCIETLEEIGDRGKEQFREAGGEELVLVPCLN DDPQWAKALATLCERAPLAL
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family
Homologues:
Organism=Escherichia coli, GI1786681, Length=339, Percent_Identity=37.1681415929204, Blast_Score=201, Evalue=4e-53, Organism=Drosophila melanogaster, GI17864156, Length=345, Percent_Identity=23.1884057971014, Blast_Score=73, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HEMH_PSEPF (Q3K6Y7)
Other databases:
- EMBL: CP000094 - RefSeq: YP_350458.1 - ProteinModelPortal: Q3K6Y7 - SMR: Q3K6Y7 - STRING: Q3K6Y7 - GeneID: 3715151 - GenomeReviews: CP000094_GR - KEGG: pfo:Pfl01_4730 - eggNOG: COG0276 - HOGENOM: HBG697135 - OMA: GLPERHL - ProtClustDB: PRK00035 - BioCyc: PFLU205922:PFL_4730-MONOMER - GO: GO:0005737 - HAMAP: MF_00323 - InterPro: IPR001015 - PANTHER: PTHR11108 - TIGRFAMs: TIGR00109
Pfam domain/function: PF00762 Ferrochelatase
EC number: =4.99.1.1
Molecular weight: Translated: 38373; Mature: 38241
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDHALLLVNLGSPASTSVADVRRYLNQFLMDPYVIDLPWPVRRLLVSLILIKRPEQSAH CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCHHHC AYASIWWDEGSPLVVLSRRLQQQMKAQWTHGPVELAMRYGEPSIETNLLKLVAAGHKRIT EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCEEE LAPLYPQFADSTTTTVIEEAKRVVREKKLDVQLSVLQPFYDQPEYLDALVASARPHLQQD EEECCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHH YDHLLLSFHGLPERHLTKLDPTGNHCFKNEDCCKNASAAVLATCYRAQCLRTAALFAERM HHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GLPDGKWSVSFQSRLGRAKWIEPYTEARLDELAKSGVKKILVMCPAFVADCIETLEEIGD CCCCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGKEQFREAGGEELVLVPCLNDDPQWAKALATLCERAPLAL HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TDHALLLVNLGSPASTSVADVRRYLNQFLMDPYVIDLPWPVRRLLVSLILIKRPEQSAH CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCHHHC AYASIWWDEGSPLVVLSRRLQQQMKAQWTHGPVELAMRYGEPSIETNLLKLVAAGHKRIT EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCEEE LAPLYPQFADSTTTTVIEEAKRVVREKKLDVQLSVLQPFYDQPEYLDALVASARPHLQQD EEECCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHH YDHLLLSFHGLPERHLTKLDPTGNHCFKNEDCCKNASAAVLATCYRAQCLRTAALFAERM HHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GLPDGKWSVSFQSRLGRAKWIEPYTEARLDELAKSGVKKILVMCPAFVADCIETLEEIGD CCCCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGKEQFREAGGEELVLVPCLNDDPQWAKALATLCERAPLAL HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA