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The map label for this gene is ycfJ [H]

Identifier: 77460838

GI number: 77460838

Start: 5215625

End: 5216173

Strand: Reverse

Name: ycfJ [H]

Synonym: Pfl01_4617

Alternate gene names: 77460838

Gene position: 5216173-5215625 (Counterclockwise)

Preceding gene: 77460839

Following gene: 77460836

Centisome position: 81.02

GC content: 59.2

Gene sequence:

>549_bases
GTGAACAAGTCGTTGCTGGTTGGTGCGGTATTGGGTGCTGTCGGTGTAACTGCCGGGGGTGCTGTTGCCACCTACAGCCT
GGTTAAAAGCGGCCCTGAGTATGCGCAAGTGCTGGCCGTAGAGCCGGTCAAAACACAGATCAAGACTCCACGTGAAGTGT
GCAAGGATGTGACGGTGACCCGGCAGGCACCGGTGAAAGATCAACACCAGATCGCCGGCACCGTGGTCGGTGCGTTGGCG
GGTGGTCTGCTGGGTAATCAGATCGGCGGCGGCACCGGCAAGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTA
CGCCGGCAACAAGGTTCAGGAGGGTATGCAGGAACGTGATACCTACACCACGACTCAGACTCGCTGTAACACGGTGAATG
ACATCAGCGACAAGGTTGTGGGCTACGACGTCCGGTATTCGCTGGATGGGAAGGAAGGCAAGGTGCGGATGGATCGTGAT
CCGGGCAACCAGATCCCGGTCGACAAGGAAGGCAAGCTGATCCTGTCGCAGAACCAGCCAGGTCAGTGA

Upstream 100 bases:

>100_bases
TCAGTCAAAAAAGACGCGAGTTGAACTCGCGTCTTTTTTTTTGCTCCAAGGCTGGGAGAAGCGCGGGCGCGTTCCCGCAT
GTGATGGTCAGGAGGTTCAT

Downstream 100 bases:

>100_bases
TTGGTTGACGGCTTATAAAAAAAGCACCCTTCGGGGTGCTTTTCATGCCCATAAAAAAACACCCCGAAGGGTGTTTTTTT
TTGGTTTCGCGAAACGCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNKSLLVGAVLGAVGVTAGGAVATYSLVKSGPEYAQVLAVEPVKTQIKTPREVCKDVTVTRQAPVKDQHQIAGTVVGALA
GGLLGNQIGGGTGKKIATVAGAVGGGYAGNKVQEGMQERDTYTTTQTRCNTVNDISDKVVGYDVRYSLDGKEGKVRMDRD
PGNQIPVDKEGKLILSQNQPGQ

Sequences:

>Translated_182_residues
MNKSLLVGAVLGAVGVTAGGAVATYSLVKSGPEYAQVLAVEPVKTQIKTPREVCKDVTVTRQAPVKDQHQIAGTVVGALA
GGLLGNQIGGGTGKKIATVAGAVGGGYAGNKVQEGMQERDTYTTTQTRCNTVNDISDKVVGYDVRYSLDGKEGKVRMDRD
PGNQIPVDKEGKLILSQNQPGQ
>Mature_182_residues
MNKSLLVGAVLGAVGVTAGGAVATYSLVKSGPEYAQVLAVEPVKTQIKTPREVCKDVTVTRQAPVKDQHQIAGTVVGALA
GGLLGNQIGGGTGKKIATVAGAVGGGYAGNKVQEGMQERDTYTTTQTRCNTVNDISDKVVGYDVRYSLDGKEGKVRMDRD
PGNQIPVDKEGKLILSQNQPGQ

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=176, Percent_Identity=54.5454545454545, Blast_Score=200, Evalue=5e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 18883; Mature: 18883

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSLLVGAVLGAVGVTAGGAVATYSLVKSGPEYAQVLAVEPVKTQIKTPREVCKDVTVT
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHCCCHHHHHHCCCCC
RQAPVKDQHQIAGTVVGALAGGLLGNQIGGGTGKKIATVAGAVGGGYAGNKVQEGMQERD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHC
TYTTTQTRCNTVNDISDKVVGYDVRYSLDGKEGKVRMDRDPGNQIPVDKEGKLILSQNQP
CCCCHHHCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEECCCC
GQ
CC
>Mature Secondary Structure
MNKSLLVGAVLGAVGVTAGGAVATYSLVKSGPEYAQVLAVEPVKTQIKTPREVCKDVTVT
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHCCCHHHHHHCCCCC
RQAPVKDQHQIAGTVVGALAGGLLGNQIGGGTGKKIATVAGAVGGGYAGNKVQEGMQERD
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHC
TYTTTQTRCNTVNDISDKVVGYDVRYSLDGKEGKVRMDRDPGNQIPVDKEGKLILSQNQP
CCCCHHHCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEECCCC
GQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]