Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 77460839

GI number: 77460839

Start: 5216295

End: 5217209

Strand: Reverse

Name: secF [H]

Synonym: Pfl01_4618

Alternate gene names: 77460839

Gene position: 5217209-5216295 (Counterclockwise)

Preceding gene: 77460840

Following gene: 77460838

Centisome position: 81.03

GC content: 58.8

Gene sequence:

>915_bases
ATGTTACGTACAATCAACTTCATGGGCGTCCGCAACTTTGCGTTCGGCGTCACCGTATTTCTGACCTTGCTGGCAATCTT
CAGTGTGTTCCACAAGGGCATGAACTGGGGGCTGGACTTCACCGGTGGTACGCTCATCGAGCTGACCTACGAGCGTCCGG
CTGACGTCACCAAGGTGCGCGAGCAACTGGTGACTTCGGGTTACCACGAGGCCGTCGTGCAGAACTTCGGTGCAACCACC
GACCTGCTGGTGCGTATGCCGGGTGAAGACCCGCAACTGGGTCATCAGGTTGCAGAAGCGCTGCAAAGGGTCGGCGGCGA
TAACCCCGCTACCGTCAAGCGTGTCGAGTTCGTCGGCCCGCAGGTCGGTGAAGAGCTGCGTGATCAGGGCGGCCTCGGCA
TGCTGCTGGCACTCGGCGGCATCCTGATCTACCTGGCTTTCCGCTTTCAGTGGAAGTTCGCGGTCGGCGCCATCGTATCG
CTGATCCACGACGTGATCGTGACCATCGGTATCCTGTCGTTTTTCCAGATCACCTTCGACCTGACGGTGTTGGCGGCGGT
GCTGGCGATCATCGGCTACTCGCTCAACGACACCATCGTCGTATTCGACCGGGTGCGTGAGAACTTCCGTGTCCTGCGCA
AGGCTTCGCTGATCGAGAACATCAACATCTCGACGACTCAGACCTTGCTGCGGACCATGGCAACGTCGATCTCCACCCTG
CTGGCGATCGCGGCGCTGCTGTTCTTTGGTGGCGATAACCTGTTCGGCTTCTCCATCGCCCTGTTTATCGGTGTTCTGGC
GGGTACCTACTCGTCGATCTACATCGCGAACGTGGTGTTGATCTGGCTGAACCTGAGCACTGAAGATCTCATCCCTCCGG
CCAACACCGAGAAGGAAGTCGACGACCGTCCATAA

Upstream 100 bases:

>100_bases
CTTTACCTCGATGTTCACGGCCATCATGGTGACCCGCGCAATGGTCAACCTGATCTTTGGCGGACGTGACTTCAAGAAGT
TGTGGATTTAAGGGGCTGCC

Downstream 100 bases:

>100_bases
GGGCCATCGATTTTCCGGCGGTCAGTCAAAAAAGACGCGAGTTGAACTCGCGTCTTTTTTTTTGCTCCAAGGCTGGGAGA
AGCGCGGGCGCGTTCCCGCA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLRTINFMGVRNFAFGVTVFLTLLAIFSVFHKGMNWGLDFTGGTLIELTYERPADVTKVREQLVTSGYHEAVVQNFGATT
DLLVRMPGEDPQLGHQVAEALQRVGGDNPATVKRVEFVGPQVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIVS
LIHDVIVTIGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKASLIENINISTTQTLLRTMATSISTL
LAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWLNLSTEDLIPPANTEKEVDDRP

Sequences:

>Translated_304_residues
MLRTINFMGVRNFAFGVTVFLTLLAIFSVFHKGMNWGLDFTGGTLIELTYERPADVTKVREQLVTSGYHEAVVQNFGATT
DLLVRMPGEDPQLGHQVAEALQRVGGDNPATVKRVEFVGPQVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIVS
LIHDVIVTIGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKASLIENINISTTQTLLRTMATSISTL
LAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWLNLSTEDLIPPANTEKEVDDRP
>Mature_304_residues
MLRTINFMGVRNFAFGVTVFLTLLAIFSVFHKGMNWGLDFTGGTLIELTYERPADVTKVREQLVTSGYHEAVVQNFGATT
DLLVRMPGEDPQLGHQVAEALQRVGGDNPATVKRVEFVGPQVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIVS
LIHDVIVTIGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKASLIENINISTTQTLLRTMATSISTL
LAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWLNLSTEDLIPPANTEKEVDDRP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=307, Percent_Identity=45.6026058631922, Blast_Score=275, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33336; Mature: 33336

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTINFMGVRNFAFGVTVFLTLLAIFSVFHKGMNWGLDFTGGTLIELTYERPADVTKVR
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHH
EQLVTSGYHEAVVQNFGATTDLLVRMPGEDPQLGHQVAEALQRVGGDNPATVKRVEFVGP
HHHHHCCHHHHHHHHCCCCHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCH
QVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVIVTIGILSFFQITFD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKASLIENINISTTQTLLRTMATSISTL
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWLNLSTEDLIPPANTEKEV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCCCCCCCC
DDRP
CCCC
>Mature Secondary Structure
MLRTINFMGVRNFAFGVTVFLTLLAIFSVFHKGMNWGLDFTGGTLIELTYERPADVTKVR
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHH
EQLVTSGYHEAVVQNFGATTDLLVRMPGEDPQLGHQVAEALQRVGGDNPATVKRVEFVGP
HHHHHCCHHHHHHHHCCCCHHEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCH
QVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVIVTIGILSFFQITFD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRKASLIENINISTTQTLLRTMATSISTL
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWLNLSTEDLIPPANTEKEV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCCCCCCCC
DDRP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]