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The map label for this gene is nifU [H]

Identifier: 77460832

GI number: 77460832

Start: 5210601

End: 5210987

Strand: Reverse

Name: nifU [H]

Synonym: Pfl01_4611

Alternate gene names: 77460832

Gene position: 5210987-5210601 (Counterclockwise)

Preceding gene: 77460833

Following gene: 77460831

Centisome position: 80.94

GC content: 56.33

Gene sequence:

>387_bases
ATGGCTTACAGCGAAAAGGTCATCGACCACTACGAAAACCCGCGCAACGTCGGCAAGATGAACGCGGAAGATCCTGATGT
CGGCACTGGCATGGTCGGCGCTCCGGCGTGCGGCGACGTGATGCGTCTGCAAATCAAGGTCAACGATCAGGGCGTTATCG
AAGACGCCAAGTTCAAGACCTACGGCTGCGGTTCGGCTATCGCCTCCAGCTCCCTCGCTACCGAGTGGATGAAGGGCAAG
ACTCTGGACGAAGCTGAAACCATCAAGAACACTCAGCTGGCCGAAGAACTGGCTCTGCCGCCAGTGAAAATCCACTGCTC
GGTTCTCGCTGAAGACGCTATCAAAGCGGCCGTTCGCGATTACAAGCAGAAGAAAGGCTTGATCTGA

Upstream 100 bases:

>100_bases
TATAGAAGCCGCCGGATACAGATCCTGTAGCGACGCGGCGGTTTACGCAGCGCAGTTGCAGGGTCTCAAGAGCGGCCCTG
ATGAGTGAGGATTGAGAATC

Downstream 100 bases:

>100_bases
CTTTCAAGATTTGGCGACGAGTAAGGAGTCAACGATGGCTATCAGCATGACAGAAGCGGCTGCTCGACACGTGCGGCGCT
CCCTCGACGGGCGCGGCAAG

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSEKVIDHYENPRNVGKMNAEDPDVGTGMVGAPACGDVMRLQIKVNDQGVIEDAKFKTYGCGSAIASSSLATEWMKGK
TLDEAETIKNTQLAEELALPPVKIHCSVLAEDAIKAAVRDYKQKKGLI

Sequences:

>Translated_128_residues
MAYSEKVIDHYENPRNVGKMNAEDPDVGTGMVGAPACGDVMRLQIKVNDQGVIEDAKFKTYGCGSAIASSSLATEWMKGK
TLDEAETIKNTQLAEELALPPVKIHCSVLAEDAIKAAVRDYKQKKGLI
>Mature_127_residues
AYSEKVIDHYENPRNVGKMNAEDPDVGTGMVGAPACGDVMRLQIKVNDQGVIEDAKFKTYGCGSAIASSSLATEWMKGKT
LDEAETIKNTQLAEELALPPVKIHCSVLAEDAIKAAVRDYKQKKGLI

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=123, Percent_Identity=71.5447154471545, Blast_Score=193, Evalue=3e-50,
Organism=Homo sapiens, GI24307953, Length=122, Percent_Identity=71.3114754098361, Blast_Score=190, Evalue=3e-49,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=80, Blast_Score=218, Evalue=7e-59,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=70.7317073170732, Blast_Score=195, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=70.9677419354839, Blast_Score=191, Evalue=4e-50,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=68.5483870967742, Blast_Score=184, Evalue=3e-48,
Organism=Drosophila melanogaster, GI21355597, Length=123, Percent_Identity=71.5447154471545, Blast_Score=192, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13842; Mature: 13711

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVIDHYENPRNVGKMNAEDPDVGTGMVGAPACGDVMRLQIKVNDQGVIEDAKFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLATEWMKGKTLDEAETIKNTQLAEELALPPVKIHCSVLAEDAIKAAVRD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKQKKGLI
HHHHCCCC
>Mature Secondary Structure 
AYSEKVIDHYENPRNVGKMNAEDPDVGTGMVGAPACGDVMRLQIKVNDQGVIEDAKFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLATEWMKGKTLDEAETIKNTQLAEELALPPVKIHCSVLAEDAIKAAVRD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKQKKGLI
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]