Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 77460814

GI number: 77460814

Start: 5192857

End: 5193678

Strand: Direct

Name: yebA [H]

Synonym: Pfl01_4593

Alternate gene names: 77460814

Gene position: 5192857-5193678 (Clockwise)

Preceding gene: 77460813

Following gene: 77460815

Centisome position: 80.65

GC content: 60.83

Gene sequence:

>822_bases
ATGCCGCGCTTTCTCGCTCCGCTGCTGTTGCTGTGCCTGACCTTCAACGCTCACGCCGACAGTTACATCACCCGCCTGCT
GAACAAACCGGTGCCGGGCGGCGTGGCTGTCGTCGATCTGGGCACCGCTGCGCAAGCGCCGAAAGCCACGTATCAGGGCA
AACCGGTGCTGGTGGTCAAGGAACAGAACAACTGGCTGGCGATTGTCGGCCTTGCGTTGACCGTCAAACCCGGCATTCAG
CAGATCAGCAGTGGCGGCCGCAACCTCAATTTCAGTGTCGGCAACAAGAAATACCCGGAACAGCACATCACCCTGAAGAA
CACCCAGCAGGTCAATCCGAACCCGGCCAACCTCAAGCGTATCGAGGGCGAGCTGGCCGAACAGATCAAGGCCTACCGCA
GTTTCAGCCCGAACACCCCGAGCAACCTGCTGCTGGACAAACCGGTCAACGGGCCGCTGTCGAGCAAGTTCGGCGTGCGC
CGTTTCTTCAACGGTGAAGAGCGTAATCCGCACGCAGGTCTGGACTTCGCGGTGCCGGCCGGCACGCCGATCAAGACTCC
GGCAGCGGGCAAGGTGATCCTGATCGGTAACTACTTCTTCAATGGCAACACCGTGTTCGTCGACCACGGCCAGGGCTTCA
TCAGCATGTTCTGTCATATGTCGAAAATCGATGTGCAGAACGGCCAGCAACTGGCGCGCGGCGCGGTGGTGGGCAAGGTG
GGCGCTACAGGTCGAGCGACCGGGCCGCACATGCACTGGAACGTCAGCCTGAACGATGCGCGGGTCGATCCGGCGATTTT
CATTGGGGCTTTCCAGCCTTGA

Upstream 100 bases:

>100_bases
CGGTCAGCGCCTCAAGGCCAGACTGGGCGAAGGCGAACTGCAAGTGCGCGTCGAGGACAATCACCTGACGCCCGTCACTC
TCTCTTTACTGGACTGATCC

Downstream 100 bases:

>100_bases
TTTCCGGCTGAACCCCCACCAGCAGGGATTGCGCACGACGAATGGTCCGCGCAATCCCCGCAAACAATTACAGCCATATC
AAGAATAAAATCTCGGAAAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MPRFLAPLLLLCLTFNAHADSYITRLLNKPVPGGVAVVDLGTAAQAPKATYQGKPVLVVKEQNNWLAIVGLALTVKPGIQ
QISSGGRNLNFSVGNKKYPEQHITLKNTQQVNPNPANLKRIEGELAEQIKAYRSFSPNTPSNLLLDKPVNGPLSSKFGVR
RFFNGEERNPHAGLDFAVPAGTPIKTPAAGKVILIGNYFFNGNTVFVDHGQGFISMFCHMSKIDVQNGQQLARGAVVGKV
GATGRATGPHMHWNVSLNDARVDPAIFIGAFQP

Sequences:

>Translated_273_residues
MPRFLAPLLLLCLTFNAHADSYITRLLNKPVPGGVAVVDLGTAAQAPKATYQGKPVLVVKEQNNWLAIVGLALTVKPGIQ
QISSGGRNLNFSVGNKKYPEQHITLKNTQQVNPNPANLKRIEGELAEQIKAYRSFSPNTPSNLLLDKPVNGPLSSKFGVR
RFFNGEERNPHAGLDFAVPAGTPIKTPAAGKVILIGNYFFNGNTVFVDHGQGFISMFCHMSKIDVQNGQQLARGAVVGKV
GATGRATGPHMHWNVSLNDARVDPAIFIGAFQP
>Mature_272_residues
PRFLAPLLLLCLTFNAHADSYITRLLNKPVPGGVAVVDLGTAAQAPKATYQGKPVLVVKEQNNWLAIVGLALTVKPGIQQ
ISSGGRNLNFSVGNKKYPEQHITLKNTQQVNPNPANLKRIEGELAEQIKAYRSFSPNTPSNLLLDKPVNGPLSSKFGVRR
FFNGEERNPHAGLDFAVPAGTPIKTPAAGKVILIGNYFFNGNTVFVDHGQGFISMFCHMSKIDVQNGQQLARGAVVGKVG
ATGRATGPHMHWNVSLNDARVDPAIFIGAFQP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=120, Percent_Identity=35, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=29.8969072164948, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 29412; Mature: 29281

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRFLAPLLLLCLTFNAHADSYITRLLNKPVPGGVAVVDLGTAAQAPKATYQGKPVLVVK
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEE
EQNNWLAIVGLALTVKPGIQQISSGGRNLNFSVGNKKYPEQHITLKNTQQVNPNPANLKR
ECCCEEEEEEEEEEECCCHHHHHCCCCEEEEECCCCCCCHHEEEECCCCCCCCCCCHHHH
IEGELAEQIKAYRSFSPNTPSNLLLDKPVNGPLSSKFGVRRFFNGEERNPHAGLDFAVPA
HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCC
GTPIKTPAAGKVILIGNYFFNGNTVFVDHGQGFISMFCHMSKIDVQNGQQLARGAVVGKV
CCCCCCCCCCEEEEEEEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHEEECC
GATGRATGPHMHWNVSLNDARVDPAIFIGAFQP
CCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC
>Mature Secondary Structure 
PRFLAPLLLLCLTFNAHADSYITRLLNKPVPGGVAVVDLGTAAQAPKATYQGKPVLVVK
CHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEE
EQNNWLAIVGLALTVKPGIQQISSGGRNLNFSVGNKKYPEQHITLKNTQQVNPNPANLKR
ECCCEEEEEEEEEEECCCHHHHHCCCCEEEEECCCCCCCHHEEEECCCCCCCCCCCHHHH
IEGELAEQIKAYRSFSPNTPSNLLLDKPVNGPLSSKFGVRRFFNGEERNPHAGLDFAVPA
HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCC
GTPIKTPAAGKVILIGNYFFNGNTVFVDHGQGFISMFCHMSKIDVQNGQQLARGAVVGKV
CCCCCCCCCCEEEEEEEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHEEECC
GATGRATGPHMHWNVSLNDARVDPAIFIGAFQP
CCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]