| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is yagX [H]
Identifier: 77460791
GI number: 77460791
Start: 5163581
End: 5166151
Strand: Reverse
Name: yagX [H]
Synonym: Pfl01_4570
Alternate gene names: 77460791
Gene position: 5166151-5163581 (Counterclockwise)
Preceding gene: 77460792
Following gene: 77460790
Centisome position: 80.24
GC content: 61.45
Gene sequence:
>2571_bases ATGTCTGTCAGCCGGACTTTTTTCCGTTCGCAATCAGAGTCCGTGTTCATGTTCCCGATGACCCCCGTCGCGGCTGCGCT TGCGCTGTTGTTGTGTGCTGGCGCAGTAGTGGCTTCCGAACCTGCCGGTACGACGCCGCGTAGTTTGCTCGCGCAAGCCA AAGGCTTGCCGAAAGACTTCGAGGAGCACTTTTTTGATGTCCCTCTGGCTGTTCGGGTCGAACTCGACCATCAGCCGTTG GGCGAAGCGATGATTGTGCTGTCTCGTGATGACCGCCTCACCCTGCTCGAATTCACCGACACCAGCGAGAACCGTTTCGG CGCTGTCGAACGGGAAAAGTGGGCGAGCTATCTCAAGCCCGGCGTGGCGCTGGGATCATGCGCCGGTCAATGCCCCGAGC AAATGCTGGCGGTGCATTACAACCTGGAAAACTCCCTCGTCTCCATCCTGACCGAGAATGCCGAACGCGACGTCGAAGCC AAGCGTTTCTACGACCAGCCGGAAAATGGCAGCACCGGTCTGATCGTGCGTAACCAGCTCAACCTCAACGGCGGCCAGGA GCAGGATCTGGGTGGGCGTTTCGGCCTGGAGGCCAACGGCAGCCTGGGCAACTGGAGCCAGACGTTCAACATGCAGCTGG CCCGTCTCGGTGGTCCGGACGACAAGCTCTATCACGCCGTCTACGAGCTGCATACCCAGCGCGAGCTGCAAGGCAGTTTT CTGCGACTGGGCTATTTCACCCCCACGTCGGAAGGCTTGACCCGTCAGCTGCGCTCATTCGGCACCAGCCCCGATACCAC CGTGGGCTTGATGTACGGCAGTTCCGACAGCCTGGCGATCGACCTGCAAAACCCGAGCGTCTACCCGATCTATGTCACCG CCAACCGTCAGGCCTCGGTGGAAATCTACCGCGACGGTCTGCTCATCAACACCCAGTCGGTGCCCGCCGGTTTGCAGACC CTCGATACCCGGCCCTTGCCCGGCGGGATTTATGAAGTGGAAGTGCGCCTGATCGAGGACGGTCAGACGACATCGAGCAC CCAGGAGCTGGTCTACAAGCCGAGCAACTGGCGTAACCCCGACGAGCGCTGGCGCTACAACCTGTTTGCCGGTCAGGAAA CCAAACTGCTCAGCAACTGGGACAAGCAGGCCAGTGGCGACGCCACCGCAGGGGCTTCGCTCAACTATTTGCTGCACCCG CGGGTCGTCCTCGGGCTGTCGGCGCGTCAGGTTCGGGAAAAGCTGCAATACGGCACCTCCATCGACTGGACCCTGGCCAA CAGCACCAGTCTGTACGCCAACTTCTACCAGACCGAAGACCATGGCACCGGCATCGATCTGCAGGGCCTCTACAACTATG GCGCCGGCAGTCTGGTGATCAGTCACAACCGCAGCTGGCTGGACACCACCAATATTTACGACACGCTGCCGGACGGCACG CGCATCCGTCAGCGCAACGTGTTCACCGGGCAGACCAGCAATTCCTCTCTGGCCCTGAACCATCGCGTCAGCCGCAACAG TTCGCTAAATGCCCGGGTTGCCCACAGTGAAGGTAACGTCGAAGGCATTGGCGTCGACCTGGGCTGGACCCAGCGCACGA CGGTGTTTGGCAGTGATTCGAACTGGCGGCTGTCGGTGTTCGACCGGCCGGGCAGTTACAGCAGTGGCGATGCGCGCAAC CGGGGTATTGATCTGAGCCTGAACGTGGCGCTCGGCGGACCGGGGCAGCAGATTTCCGGCAGCATCGGCACGCGCACCGC ACGGGACGGCAGCCGGGACAACAACGCTTCGCTGGGTTACCGCAAAACCCTTGAGGATCACGTGCTGCAAAGCGTGGCGG CGACCATGATCACCGACACCTACGGAATCGGCTTGAACGGTCAGGCTTATTTCAGCACCGACACGGTCAACGGCGATGGT TTCGTCCAGCGCTCGTCCTATAACGGCAATTACACCGGTGGCCTGAACCTCGACAGCACTGTGGCCATCGGTAGGCAGCA GATCGTGATGACCAGCCAGCACCAGGGGCGCGGAGCGGGAATGATCGTGGATGTCGAGTCCGATATCGACGGCATCGCTT TGCGCGCCGACGACTTGAGTGGTGGCAGCGCATCCCTGCGGCCGGGACGCAACTTCATTCCCCTTACGGCCTACAAGAAC AGCTCGGTCAGCTTCGACTTCGAAGGCAACGACGTGCCGGCAGCGTCCATCGAACCGCCGCGCGCCCGTTATCACTTGAA CAAGGGCGGCGTGGAGTATCGCAAGGTGAAAGTGATGAAAACCCTGACCGTGCTCGGCCGTCTGCTCGACCCCCAGGGGC GACCGCTCAAGGGGCACCACGTCATCAATCACGCCAGCCGCGGGGTGAGCGAAGTGGACGGGTTCTTCTCCATGGAAATG AACGAGGGTTCTCCGACGCTGGAGGTTCGCTACGCGGACCAGTTGCTGTGCCAGTTCCGCCTCGATCCGCAACAGGGGCG AGTGGAGAACAACGTGCTGATGATTGGTGACCTGCGTTGCAGCCCCGACACCCTGGCCGATGCCACATTCACCGAACAGA AGGCGGGCTGA
Upstream 100 bases:
>100_bases GCGATTACACCGGCGCAGTCACCATGATGTTCGACGCTGTTCCTCCCGTCGGCGCCGCGCTCTAACCCGTGAAGTAACAA AAGCCGGCTGGCTGACGCGA
Downstream 100 bases:
>100_bases GCGATGAAGAAAACAGCGTGTTGGCTGGGTTTGCTGACAGTGCTGGGCATGTCAGGGGCGCAGGCAGCGAACCAGGAGAT CCGGGCGCTGTTCCAGCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MSVSRTFFRSQSESVFMFPMTPVAAALALLLCAGAVVASEPAGTTPRSLLAQAKGLPKDFEEHFFDVPLAVRVELDHQPL GEAMIVLSRDDRLTLLEFTDTSENRFGAVEREKWASYLKPGVALGSCAGQCPEQMLAVHYNLENSLVSILTENAERDVEA KRFYDQPENGSTGLIVRNQLNLNGGQEQDLGGRFGLEANGSLGNWSQTFNMQLARLGGPDDKLYHAVYELHTQRELQGSF LRLGYFTPTSEGLTRQLRSFGTSPDTTVGLMYGSSDSLAIDLQNPSVYPIYVTANRQASVEIYRDGLLINTQSVPAGLQT LDTRPLPGGIYEVEVRLIEDGQTTSSTQELVYKPSNWRNPDERWRYNLFAGQETKLLSNWDKQASGDATAGASLNYLLHP RVVLGLSARQVREKLQYGTSIDWTLANSTSLYANFYQTEDHGTGIDLQGLYNYGAGSLVISHNRSWLDTTNIYDTLPDGT RIRQRNVFTGQTSNSSLALNHRVSRNSSLNARVAHSEGNVEGIGVDLGWTQRTTVFGSDSNWRLSVFDRPGSYSSGDARN RGIDLSLNVALGGPGQQISGSIGTRTARDGSRDNNASLGYRKTLEDHVLQSVAATMITDTYGIGLNGQAYFSTDTVNGDG FVQRSSYNGNYTGGLNLDSTVAIGRQQIVMTSQHQGRGAGMIVDVESDIDGIALRADDLSGGSASLRPGRNFIPLTAYKN SSVSFDFEGNDVPAASIEPPRARYHLNKGGVEYRKVKVMKTLTVLGRLLDPQGRPLKGHHVINHASRGVSEVDGFFSMEM NEGSPTLEVRYADQLLCQFRLDPQQGRVENNVLMIGDLRCSPDTLADATFTEQKAG
Sequences:
>Translated_856_residues MSVSRTFFRSQSESVFMFPMTPVAAALALLLCAGAVVASEPAGTTPRSLLAQAKGLPKDFEEHFFDVPLAVRVELDHQPL GEAMIVLSRDDRLTLLEFTDTSENRFGAVEREKWASYLKPGVALGSCAGQCPEQMLAVHYNLENSLVSILTENAERDVEA KRFYDQPENGSTGLIVRNQLNLNGGQEQDLGGRFGLEANGSLGNWSQTFNMQLARLGGPDDKLYHAVYELHTQRELQGSF LRLGYFTPTSEGLTRQLRSFGTSPDTTVGLMYGSSDSLAIDLQNPSVYPIYVTANRQASVEIYRDGLLINTQSVPAGLQT LDTRPLPGGIYEVEVRLIEDGQTTSSTQELVYKPSNWRNPDERWRYNLFAGQETKLLSNWDKQASGDATAGASLNYLLHP RVVLGLSARQVREKLQYGTSIDWTLANSTSLYANFYQTEDHGTGIDLQGLYNYGAGSLVISHNRSWLDTTNIYDTLPDGT RIRQRNVFTGQTSNSSLALNHRVSRNSSLNARVAHSEGNVEGIGVDLGWTQRTTVFGSDSNWRLSVFDRPGSYSSGDARN RGIDLSLNVALGGPGQQISGSIGTRTARDGSRDNNASLGYRKTLEDHVLQSVAATMITDTYGIGLNGQAYFSTDTVNGDG FVQRSSYNGNYTGGLNLDSTVAIGRQQIVMTSQHQGRGAGMIVDVESDIDGIALRADDLSGGSASLRPGRNFIPLTAYKN SSVSFDFEGNDVPAASIEPPRARYHLNKGGVEYRKVKVMKTLTVLGRLLDPQGRPLKGHHVINHASRGVSEVDGFFSMEM NEGSPTLEVRYADQLLCQFRLDPQQGRVENNVLMIGDLRCSPDTLADATFTEQKAG >Mature_855_residues SVSRTFFRSQSESVFMFPMTPVAAALALLLCAGAVVASEPAGTTPRSLLAQAKGLPKDFEEHFFDVPLAVRVELDHQPLG EAMIVLSRDDRLTLLEFTDTSENRFGAVEREKWASYLKPGVALGSCAGQCPEQMLAVHYNLENSLVSILTENAERDVEAK RFYDQPENGSTGLIVRNQLNLNGGQEQDLGGRFGLEANGSLGNWSQTFNMQLARLGGPDDKLYHAVYELHTQRELQGSFL RLGYFTPTSEGLTRQLRSFGTSPDTTVGLMYGSSDSLAIDLQNPSVYPIYVTANRQASVEIYRDGLLINTQSVPAGLQTL DTRPLPGGIYEVEVRLIEDGQTTSSTQELVYKPSNWRNPDERWRYNLFAGQETKLLSNWDKQASGDATAGASLNYLLHPR VVLGLSARQVREKLQYGTSIDWTLANSTSLYANFYQTEDHGTGIDLQGLYNYGAGSLVISHNRSWLDTTNIYDTLPDGTR IRQRNVFTGQTSNSSLALNHRVSRNSSLNARVAHSEGNVEGIGVDLGWTQRTTVFGSDSNWRLSVFDRPGSYSSGDARNR GIDLSLNVALGGPGQQISGSIGTRTARDGSRDNNASLGYRKTLEDHVLQSVAATMITDTYGIGLNGQAYFSTDTVNGDGF VQRSSYNGNYTGGLNLDSTVAIGRQQIVMTSQHQGRGAGMIVDVESDIDGIALRADDLSGGSASLRPGRNFIPLTAYKNS SVSFDFEGNDVPAASIEPPRARYHLNKGGVEYRKVKVMKTLTVLGRLLDPQGRPLKGHHVINHASRGVSEVDGFFSMEMN EGSPTLEVRYADQLLCQFRLDPQQGRVENNVLMIGDLRCSPDTLADATFTEQKAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli plasmid NTP513 CFA fimbria subunit C (CfaC) [H]
Homologues:
Organism=Escherichia coli, GI1786484, Length=253, Percent_Identity=25.6916996047431, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008969 - InterPro: IPR014766 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93649; Mature: 93518
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSRTFFRSQSESVFMFPMTPVAAALALLLCAGAVVASEPAGTTPRSLLAQAKGLPKDF CCCCCCHHHCCCCCEEEEECHHHHHHHHHHHHHCHHEECCCCCCCHHHHHHHHCCCCHHH EEHFFDVPLAVRVELDHQPLGEAMIVLSRDDRLTLLEFTDTSENRFGAVEREKWASYLKP HHHHHCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHCC GVALGSCAGQCPEQMLAVHYNLENSLVSILTENAERDVEAKRFYDQPENGSTGLIVRNQL CCEEHHHHCCCCHHEEEEEECCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEEEEE NLNGGQEQDLGGRFGLEANGSLGNWSQTFNMQLARLGGPDDKLYHAVYELHTQRELQGSF CCCCCCCCCCCCEECEECCCCCCCCCCEECEEEEECCCCCHHHHHHHHHHHHHHHHCCCE LRLGYFTPTSEGLTRQLRSFGTSPDTTVGLMYGSSDSLAIDLQNPSVYPIYVTANRQASV EEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCEEE EIYRDGLLINTQSVPAGLQTLDTRPLPGGIYEVEVRLIEDGQTTSSTQELVYKPSNWRNP EEEECCEEEECCCCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHEEECCCCCCCC DERWRYNLFAGQETKLLSNWDKQASGDATAGASLNYLLHPRVVLGLSARQVREKLQYGTS HHHEEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHCCCC IDWTLANSTSLYANFYQTEDHGTGIDLQGLYNYGAGSLVISHNRSWLDTTNIYDTLPDGT EEEEEECCCEEEEEEEEECCCCCCEEEHHHCCCCCCEEEEECCCCCCCCCCCHHCCCCCC RIRQRNVFTGQTSNSSLALNHRVSRNSSLNARVAHSEGNVEGIGVDLGWTQRTTVFGSDS EEEECCEEECCCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCC NWRLSVFDRPGSYSSGDARNRGIDLSLNVALGGPGQQISGSIGTRTARDGSRDNNASLGY CEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH RKTLEDHVLQSVAATMITDTYGIGLNGQAYFSTDTVNGDGFVQRSSYNGNYTGGLNLDST HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEECCCCEEEECCCCCCEECCCCCCCE VAIGRQQIVMTSQHQGRGAGMIVDVESDIDGIALRADDLSGGSASLRPGRNFIPLTAYKN EECCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECC SSVSFDFEGNDVPAASIEPPRARYHLNKGGVEYRKVKVMKTLTVLGRLLDPQGRPLKGHH CCEEEEECCCCCCCCCCCCCHHEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCH VINHASRGVSEVDGFFSMEMNEGSPTLEVRYADQLLCQFRLDPQQGRVENNVLMIGDLRC HHHHHHCCHHHHCCEEEEEECCCCCEEEEEEHHHHHEEEECCCCCCCCCCCEEEEEECCC SPDTLADATFTEQKAG CCCHHCCCCCCCCCCC >Mature Secondary Structure SVSRTFFRSQSESVFMFPMTPVAAALALLLCAGAVVASEPAGTTPRSLLAQAKGLPKDF CCCCCHHHCCCCCEEEEECHHHHHHHHHHHHHCHHEECCCCCCCHHHHHHHHCCCCHHH EEHFFDVPLAVRVELDHQPLGEAMIVLSRDDRLTLLEFTDTSENRFGAVEREKWASYLKP HHHHHCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHCC GVALGSCAGQCPEQMLAVHYNLENSLVSILTENAERDVEAKRFYDQPENGSTGLIVRNQL CCEEHHHHCCCCHHEEEEEECCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEEEEE NLNGGQEQDLGGRFGLEANGSLGNWSQTFNMQLARLGGPDDKLYHAVYELHTQRELQGSF CCCCCCCCCCCCEECEECCCCCCCCCCEECEEEEECCCCCHHHHHHHHHHHHHHHHCCCE LRLGYFTPTSEGLTRQLRSFGTSPDTTVGLMYGSSDSLAIDLQNPSVYPIYVTANRQASV EEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCEEE EIYRDGLLINTQSVPAGLQTLDTRPLPGGIYEVEVRLIEDGQTTSSTQELVYKPSNWRNP EEEECCEEEECCCCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHEEECCCCCCCC DERWRYNLFAGQETKLLSNWDKQASGDATAGASLNYLLHPRVVLGLSARQVREKLQYGTS HHHEEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHCCCC IDWTLANSTSLYANFYQTEDHGTGIDLQGLYNYGAGSLVISHNRSWLDTTNIYDTLPDGT EEEEEECCCEEEEEEEEECCCCCCEEEHHHCCCCCCEEEEECCCCCCCCCCCHHCCCCCC RIRQRNVFTGQTSNSSLALNHRVSRNSSLNARVAHSEGNVEGIGVDLGWTQRTTVFGSDS EEEECCEEECCCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCC NWRLSVFDRPGSYSSGDARNRGIDLSLNVALGGPGQQISGSIGTRTARDGSRDNNASLGY CEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH RKTLEDHVLQSVAATMITDTYGIGLNGQAYFSTDTVNGDGFVQRSSYNGNYTGGLNLDST HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEECCCCEEEECCCCCCEECCCCCCCE VAIGRQQIVMTSQHQGRGAGMIVDVESDIDGIALRADDLSGGSASLRPGRNFIPLTAYKN EECCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECC SSVSFDFEGNDVPAASIEPPRARYHLNKGGVEYRKVKVMKTLTVLGRLLDPQGRPLKGHH CCEEEEECCCCCCCCCCCCCHHEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCH VINHASRGVSEVDGFFSMEMNEGSPTLEVRYADQLLCQFRLDPQQGRVENNVLMIGDLRC HHHHHHCCHHHHCCEEEEEECCCCCEEEEEEHHHHHEEEECCCCCCCCCCCEEEEEECCC SPDTLADATFTEQKAG CCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]