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The map label for this gene is yciR [C]

Identifier: 77460773

GI number: 77460773

Start: 5133424

End: 5135298

Strand: Direct

Name: yciR [C]

Synonym: Pfl01_4552

Alternate gene names: 77460773

Gene position: 5133424-5135298 (Clockwise)

Preceding gene: 77460772

Following gene: 77460774

Centisome position: 79.73

GC content: 60.91

Gene sequence:

>1875_bases
ATGAAAACACCTTTTCCCCAGACCAACCGGCGCATTCTGATCGTCGATGACACCCCGGCGATCCATGCCGACTTTCGCAA
GATCCTCACCCCGGACACCCACGGTGAAGCGGATCTGAACACGCTTGAGCAAACGCTGTTCGGCACCCGCCAATCGCCGC
ACCTGACGTTCCAGCTCGACTCCGCCTATCAGGGCCAGGAAGCACTGAAACTGGTGCAAAACGCACTGGACGAAGGCCGG
CCCTATGCCCTCGCCTTCACCGACATGCGCATGCCGCCCGGTTGGGACGGCCTGGAAACCATCGAAAAACTCTGGGCAGT
GGACCCCAATCTGCAAATTGCGCTGTGCACCGCCTATTCCGACTACAGCTGGGAGGCCATGGCAGAACGGCTGGAGTTCG
GCGATCAGTTGCTGATACTGAAAAAGCCGTTCGACACCCTGGAAATCCGCCAGATGGCCAATGCCCTGACGTGGAAATGG
CAGCTCGCCCAGGACGCGGCACTGAAGATGCTCAACCTCGAGCAGACCATCGAGGCCCGCGTGCACGAATTACTCAAGGT
CTCGCGCCTGTTGCAGTACGACAGCCTCACGGGTCTGCCCAACAGCACCTTGCTCGGTGACCGTCTGACTCAATCGCTGG
CCGCTTGCCGGCGCCATGACAAACAACTGGTGGTGATGTTTCTCGGGCTGGATCGCTTCAAGCGCATCAACAATGCCCTG
GGCCATCCGGCGGGCGACGAGATGCTCAAACGGGTCGGCCAGCAATTGCTCGCCTGCGTGCGCGAATCGGATTCGGTCTT
TCGTTATGGCTCCGACGAATTCGTGGTGATGCTCAGCGACATCAATCACCCGCAGCAGTCGCGCAGCATCGCCGAGAAAC
TACTGAGCGCCATCCGCGCTCCACAGACAATCGTCGGGCATGACGTGAGCGTCACGGCCAGTCTGGGCATCAGCCTCTAC
CCCGATGACGGGCTCGAGGCCATCGAGCTGATCAAGAAAGCTGAAACGGCCATGCGCAGCGCCAAGGAAAACGGACCGAA
CGAAATCGGCTTTTTCATCGAAGCCATGAACCAGCGCGCCCGGGAACAGCAAAGCATCGAGTCGGGTATTCGCCAGGCCC
TGCAACGCCACGAATTCGTCTTGCACTACCAGCCGAAAATCGAGCTGGCCAGCGGCCGGGTAGTCGGTGCCGAGGCACTG
GTGCGCTGGCAGAAACCGGGGCATGGCTGGGTCTATCCCTCGGAGTTCATCCCGGTGGCCGAAGACAGCGGCCTGATCGT
GCCGCTGAGCAAATGGGTGCTGGCCGAAGCCTGTCGTCAGACCCGTGAATGGCAACAGGCGGGCTTGCCGCCGATTCGCA
TGTCGGTCAACACCTCGGCCATCGACTTTCGTCAGCGTCACTTCGTCGAGGGCATCGAGCAGGTGCTGGCACAGACCGGA
CTGGATCCCCGTCTGCTGGAACTGGAGATCACCGAAGGCGTGCTGATGCAGAACGTCGACGCGACGATGAGCGCGCTGAA
CCGGCTGAAGGCGCTGGGCGTCCGACTGGCCATCGACGACTTCGGCACCGGCTATTCCAGCCTCAGCTATCTGCGCCGGT
TTCCCATCGATGTGCTGAAGATCGATCAGTCGTTCATTCGCGGTCTGAGTCACGACAGCAGCGATGCGGCGCTGGTCGGC
GCGATCATCAGCCTGGGCAAGAGCCTGAACCTGAACGTCATCGCCGAAGGGGTGGAGACCGCGCAAGAATTGGCGTTCCT
CAAGGACCACCACTGTGAGGAAGGTCAGGGCTACTACTTCAGCAAAGCCTTGCCGGTGGACGCCTTTGCCCGATTGCTGG
CGTCCGCTCAGCCTGGTCCGTGGGGTGTTTCATGA

Upstream 100 bases:

>100_bases
TGCAAGGCGTTTGCTTCAGGGAAGCGATCAGCCCCGAACAAGCGGCGCGTCTGCTGAAGGGCGGGAACGCGACTGCCCCG
CTGCCCAGGGAGGATGAGGG

Downstream 100 bases:

>100_bases
ATCGTCCGGCGTTGTTTCTACTGTTCGCGCTATGCGCAAACACCCTCGCCGCGCCACTGGACGAGCCGCTCAAGCCCTTG
CCGGCCATCCCGTCACAAGA

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MKTPFPQTNRRILIVDDTPAIHADFRKILTPDTHGEADLNTLEQTLFGTRQSPHLTFQLDSAYQGQEALKLVQNALDEGR
PYALAFTDMRMPPGWDGLETIEKLWAVDPNLQIALCTAYSDYSWEAMAERLEFGDQLLILKKPFDTLEIRQMANALTWKW
QLAQDAALKMLNLEQTIEARVHELLKVSRLLQYDSLTGLPNSTLLGDRLTQSLAACRRHDKQLVVMFLGLDRFKRINNAL
GHPAGDEMLKRVGQQLLACVRESDSVFRYGSDEFVVMLSDINHPQQSRSIAEKLLSAIRAPQTIVGHDVSVTASLGISLY
PDDGLEAIELIKKAETAMRSAKENGPNEIGFFIEAMNQRAREQQSIESGIRQALQRHEFVLHYQPKIELASGRVVGAEAL
VRWQKPGHGWVYPSEFIPVAEDSGLIVPLSKWVLAEACRQTREWQQAGLPPIRMSVNTSAIDFRQRHFVEGIEQVLAQTG
LDPRLLELEITEGVLMQNVDATMSALNRLKALGVRLAIDDFGTGYSSLSYLRRFPIDVLKIDQSFIRGLSHDSSDAALVG
AIISLGKSLNLNVIAEGVETAQELAFLKDHHCEEGQGYYFSKALPVDAFARLLASAQPGPWGVS

Sequences:

>Translated_624_residues
MKTPFPQTNRRILIVDDTPAIHADFRKILTPDTHGEADLNTLEQTLFGTRQSPHLTFQLDSAYQGQEALKLVQNALDEGR
PYALAFTDMRMPPGWDGLETIEKLWAVDPNLQIALCTAYSDYSWEAMAERLEFGDQLLILKKPFDTLEIRQMANALTWKW
QLAQDAALKMLNLEQTIEARVHELLKVSRLLQYDSLTGLPNSTLLGDRLTQSLAACRRHDKQLVVMFLGLDRFKRINNAL
GHPAGDEMLKRVGQQLLACVRESDSVFRYGSDEFVVMLSDINHPQQSRSIAEKLLSAIRAPQTIVGHDVSVTASLGISLY
PDDGLEAIELIKKAETAMRSAKENGPNEIGFFIEAMNQRAREQQSIESGIRQALQRHEFVLHYQPKIELASGRVVGAEAL
VRWQKPGHGWVYPSEFIPVAEDSGLIVPLSKWVLAEACRQTREWQQAGLPPIRMSVNTSAIDFRQRHFVEGIEQVLAQTG
LDPRLLELEITEGVLMQNVDATMSALNRLKALGVRLAIDDFGTGYSSLSYLRRFPIDVLKIDQSFIRGLSHDSSDAALVG
AIISLGKSLNLNVIAEGVETAQELAFLKDHHCEEGQGYYFSKALPVDAFARLLASAQPGPWGVS
>Mature_624_residues
MKTPFPQTNRRILIVDDTPAIHADFRKILTPDTHGEADLNTLEQTLFGTRQSPHLTFQLDSAYQGQEALKLVQNALDEGR
PYALAFTDMRMPPGWDGLETIEKLWAVDPNLQIALCTAYSDYSWEAMAERLEFGDQLLILKKPFDTLEIRQMANALTWKW
QLAQDAALKMLNLEQTIEARVHELLKVSRLLQYDSLTGLPNSTLLGDRLTQSLAACRRHDKQLVVMFLGLDRFKRINNAL
GHPAGDEMLKRVGQQLLACVRESDSVFRYGSDEFVVMLSDINHPQQSRSIAEKLLSAIRAPQTIVGHDVSVTASLGISLY
PDDGLEAIELIKKAETAMRSAKENGPNEIGFFIEAMNQRAREQQSIESGIRQALQRHEFVLHYQPKIELASGRVVGAEAL
VRWQKPGHGWVYPSEFIPVAEDSGLIVPLSKWVLAEACRQTREWQQAGLPPIRMSVNTSAIDFRQRHFVEGIEQVLAQTG
LDPRLLELEITEGVLMQNVDATMSALNRLKALGVRLAIDDFGTGYSSLSYLRRFPIDVLKIDQSFIRGLSHDSSDAALVG
AIISLGKSLNLNVIAEGVETAQELAFLKDHHCEEGQGYYFSKALPVDAFARLLASAQPGPWGVS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=38.7614678899083, Blast_Score=312, Evalue=3e-86,
Organism=Escherichia coli, GI87081921, Length=450, Percent_Identity=34.8888888888889, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=31.6546762589928, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=36.4341085271318, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=34.3873517786561, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=34.5833333333333, Blast_Score=155, Evalue=6e-39,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=33.7301587301587, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=33.3333333333333, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=31.9502074688797, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787055, Length=293, Percent_Identity=30.3754266211604, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=30.2788844621514, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=261, Percent_Identity=28.735632183908, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=408, Percent_Identity=25.4901960784314, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=33.5403726708075, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789650, Length=418, Percent_Identity=21.0526315789474, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=28.4023668639053, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=30.8176100628931, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787262, Length=177, Percent_Identity=27.1186440677966, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787410, Length=125, Percent_Identity=36, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=32.2368421052632, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=31.5217391304348, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=30.9090909090909, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 69689; Mature: 69689

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPFPQTNRRILIVDDTPAIHADFRKILTPDTHGEADLNTLEQTLFGTRQSPHLTFQLD
CCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
SAYQGQEALKLVQNALDEGRPYALAFTDMRMPPGWDGLETIEKLWAVDPNLQIALCTAYS
CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEC
DYSWEAMAERLEFGDQLLILKKPFDTLEIRQMANALTWKWQLAQDAALKMLNLEQTIEAR
CCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHH
VHELLKVSRLLQYDSLTGLPNSTLLGDRLTQSLAACRRHDKQLVVMFLGLDRFKRINNAL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHCHHHHHHHHHHC
GHPAGDEMLKRVGQQLLACVRESDSVFRYGSDEFVVMLSDINHPQQSRSIAEKLLSAIRA
CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
PQTIVGHDVSVTASLGISLYPDDGLEAIELIKKAETAMRSAKENGPNEIGFFIEAMNQRA
CCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
REQQSIESGIRQALQRHEFVLHYQPKIELASGRVVGAEALVRWQKPGHGWVYPSEFIPVA
HHHHHHHHHHHHHHHHCCEEEEECCCEEECCCCEECHHHHHEECCCCCCCCCCCCCCCCC
EDSGLIVPLSKWVLAEACRQTREWQQAGLPPIRMSVNTSAIDFRQRHFVEGIEQVLAQTG
CCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC
LDPRLLELEITEGVLMQNVDATMSALNRLKALGVRLAIDDFGTGYSSLSYLRRFPIDVLK
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCHHHHH
IDQSFIRGLSHDSSDAALVGAIISLGKSLNLNVIAEGVETAQELAFLKDHHCEEGQGYYF
HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
SKALPVDAFARLLASAQPGPWGVS
ECCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKTPFPQTNRRILIVDDTPAIHADFRKILTPDTHGEADLNTLEQTLFGTRQSPHLTFQLD
CCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
SAYQGQEALKLVQNALDEGRPYALAFTDMRMPPGWDGLETIEKLWAVDPNLQIALCTAYS
CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEC
DYSWEAMAERLEFGDQLLILKKPFDTLEIRQMANALTWKWQLAQDAALKMLNLEQTIEAR
CCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHH
VHELLKVSRLLQYDSLTGLPNSTLLGDRLTQSLAACRRHDKQLVVMFLGLDRFKRINNAL
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHCHHHHHHHHHHC
GHPAGDEMLKRVGQQLLACVRESDSVFRYGSDEFVVMLSDINHPQQSRSIAEKLLSAIRA
CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
PQTIVGHDVSVTASLGISLYPDDGLEAIELIKKAETAMRSAKENGPNEIGFFIEAMNQRA
CCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
REQQSIESGIRQALQRHEFVLHYQPKIELASGRVVGAEALVRWQKPGHGWVYPSEFIPVA
HHHHHHHHHHHHHHHHCCEEEEECCCEEECCCCEECHHHHHEECCCCCCCCCCCCCCCCC
EDSGLIVPLSKWVLAEACRQTREWQQAGLPPIRMSVNTSAIDFRQRHFVEGIEQVLAQTG
CCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC
LDPRLLELEITEGVLMQNVDATMSALNRLKALGVRLAIDDFGTGYSSLSYLRRFPIDVLK
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCHHHHH
IDQSFIRGLSHDSSDAALVGAIISLGKSLNLNVIAEGVETAQELAFLKDHHCEEGQGYYF
HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
SKALPVDAFARLLASAQPGPWGVS
ECCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]