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The map label for this gene is ybjS [H]

Identifier: 77460703

GI number: 77460703

Start: 5054086

End: 5055078

Strand: Reverse

Name: ybjS [H]

Synonym: Pfl01_4482

Alternate gene names: 77460703

Gene position: 5055078-5054086 (Counterclockwise)

Preceding gene: 77460704

Following gene: 77460702

Centisome position: 78.51

GC content: 61.03

Gene sequence:

>993_bases
ATGAAAATTCTGGTCACCGGCGCAAGCGGCTTCATTGGCGGACGCTTTGCGCGTTTCGCCCTGGAGCAGGGCCTGGAGGT
GCGGGTCAACGGTCGCCGGGCCGAGGGTGTCGAGCATCTGGTACGTCGCGGTGCCGAGTTCGTTCAAGGCGATCTGAGCG
ATCCGGATCTGGTGCGTGCGCTATGCAGCGATGTCGAAGCCGTGGTGCATTGCGCCGGCGCGGTCGGCTTGTGGGGCCGT
TATCAGGACTTCCATCAGGGCAACGTGCAAGTCACCGAAAACGTGGTCGAGGCCTGCCTGAAACAACGGGTTCGGCGGCT
GGTGCATCTGTCGTCGCCCTCGATCTACTTTGACGGTCGCGACCACCTCGGCCTGACCGAAGAGCAAGTGCCCAAGCGCT
TCAAGCATCACTATGCCGCGACCAAATACCTGGCCGAGCAAAAGGTCTTCGGCGCCCAGGAATTCGGCCTCGAAACCCTC
GCTCTGCGCCCGCGTTTCGTCACCGGCGCCGGCGACATGAGCATCTTCCCGCGCTTGCTGAACATGCAGCGCAAAGGTCG
TCTGGCAATTATCGGCAACGGCCTGAACAAGGTCGATTTCACCAGCGTGCACAACCTCAACGAAGCATTGCTCAGCAGCC
TGCTGGCCGATGCCTCCGCGTTGGGCAAAGCCTACAACATCAGCAACGGCGCTCCGGTGCCGCTGTGGGATGTGGTCAAT
TACGTGATGCGCAAGATGGAAGTCCCACAGGTCACCCAGTACCGTTCCTACGGTCTGGCCTACAGCGTGGCGGCGCTCAA
CGAAGGGGTGTGCAAGCTCTGGCCCGGGCGTCCCGAGCCGACCCTGTCGCGCCTGGGCATGCAGGTGATGAACAAAAATT
TCACCCTCGACATCAGTCGCGCCCGGCATTATCTGGACTACGATCCGAAAGTCAGTCTGTGGACGGCTCTCGATGAGTTC
TGCAGTTGGTGGAAAGCCCAGGACATTCGTTGA

Upstream 100 bases:

>100_bases
GCAATTGGTGCGCTCGTCGGCGCAATGGCTGGTGCCGTTGGACTGACGGCCAGCGTCAAGACTCACGAATCAGGCAAAAC
GAAAGACAGCGGAGCTCTAC

Downstream 100 bases:

>100_bases
AACGAATCGGCCGGCCGGCAATGAACCGCCCTGCCGCTTGAGGGTCAATCCTTGCGGCTGAGAGGTTTATACTTCGCCCC
CAATCTGCCATCACTGCGTT

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKILVTGASGFIGGRFARFALEQGLEVRVNGRRAEGVEHLVRRGAEFVQGDLSDPDLVRALCSDVEAVVHCAGAVGLWGR
YQDFHQGNVQVTENVVEACLKQRVRRLVHLSSPSIYFDGRDHLGLTEEQVPKRFKHHYAATKYLAEQKVFGAQEFGLETL
ALRPRFVTGAGDMSIFPRLLNMQRKGRLAIIGNGLNKVDFTSVHNLNEALLSSLLADASALGKAYNISNGAPVPLWDVVN
YVMRKMEVPQVTQYRSYGLAYSVAALNEGVCKLWPGRPEPTLSRLGMQVMNKNFTLDISRARHYLDYDPKVSLWTALDEF
CSWWKAQDIR

Sequences:

>Translated_330_residues
MKILVTGASGFIGGRFARFALEQGLEVRVNGRRAEGVEHLVRRGAEFVQGDLSDPDLVRALCSDVEAVVHCAGAVGLWGR
YQDFHQGNVQVTENVVEACLKQRVRRLVHLSSPSIYFDGRDHLGLTEEQVPKRFKHHYAATKYLAEQKVFGAQEFGLETL
ALRPRFVTGAGDMSIFPRLLNMQRKGRLAIIGNGLNKVDFTSVHNLNEALLSSLLADASALGKAYNISNGAPVPLWDVVN
YVMRKMEVPQVTQYRSYGLAYSVAALNEGVCKLWPGRPEPTLSRLGMQVMNKNFTLDISRARHYLDYDPKVSLWTALDEF
CSWWKAQDIR
>Mature_330_residues
MKILVTGASGFIGGRFARFALEQGLEVRVNGRRAEGVEHLVRRGAEFVQGDLSDPDLVRALCSDVEAVVHCAGAVGLWGR
YQDFHQGNVQVTENVVEACLKQRVRRLVHLSSPSIYFDGRDHLGLTEEQVPKRFKHHYAATKYLAEQKVFGAQEFGLETL
ALRPRFVTGAGDMSIFPRLLNMQRKGRLAIIGNGLNKVDFTSVHNLNEALLSSLLADASALGKAYNISNGAPVPLWDVVN
YVMRKMEVPQVTQYRSYGLAYSVAALNEGVCKLWPGRPEPTLSRLGMQVMNKNFTLDISRARHYLDYDPKVSLWTALDEF
CSWWKAQDIR

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=333, Percent_Identity=30.3303303303303, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI8393516, Length=333, Percent_Identity=30.3303303303303, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI116268111, Length=358, Percent_Identity=29.608938547486, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI239745448, Length=336, Percent_Identity=26.4880952380952, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI310132178, Length=336, Percent_Identity=26.4880952380952, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI310113012, Length=336, Percent_Identity=26.4880952380952, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504507, Length=354, Percent_Identity=26.271186440678, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI260763931, Length=352, Percent_Identity=26.1363636363636, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI4504509, Length=352, Percent_Identity=26.1363636363636, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI87081792, Length=332, Percent_Identity=29.5180722891566, Blast_Score=147, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17570557, Length=334, Percent_Identity=22.7544910179641, Blast_Score=71, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6321437, Length=343, Percent_Identity=26.530612244898, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 36953; Mature: 36953

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVTGASGFIGGRFARFALEQGLEVRVNGRRAEGVEHLVRRGAEFVQGDLSDPDLVRA
CEEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCHHHHHCCCCCHHHHHH
LCSDVEAVVHCAGAVGLWGRYQDFHQGNVQVTENVVEACLKQRVRRLVHLSSPSIYFDGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
DHLGLTEEQVPKRFKHHYAATKYLAEQKVFGAQEFGLETLALRPRFVTGAGDMSIFPRLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHEEECCEEEECCCCHHHHHHHH
NMQRKGRLAIIGNGLNKVDFTSVHNLNEALLSSLLADASALGKAYNISNGAPVPLWDVVN
CHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHH
YVMRKMEVPQVTQYRSYGLAYSVAALNEGVCKLWPGRPEPTLSRLGMQVMNKNFTLDISR
HHHHHCCCCHHHHHHHCCCEEEHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEHHH
ARHYLDYDPKVSLWTALDEFCSWWKAQDIR
HHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKILVTGASGFIGGRFARFALEQGLEVRVNGRRAEGVEHLVRRGAEFVQGDLSDPDLVRA
CEEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCHHHHHCCCCCHHHHHH
LCSDVEAVVHCAGAVGLWGRYQDFHQGNVQVTENVVEACLKQRVRRLVHLSSPSIYFDGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
DHLGLTEEQVPKRFKHHYAATKYLAEQKVFGAQEFGLETLALRPRFVTGAGDMSIFPRLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHEEECCEEEECCCCHHHHHHHH
NMQRKGRLAIIGNGLNKVDFTSVHNLNEALLSSLLADASALGKAYNISNGAPVPLWDVVN
CHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHH
YVMRKMEVPQVTQYRSYGLAYSVAALNEGVCKLWPGRPEPTLSRLGMQVMNKNFTLDISR
HHHHHCCCCHHHHHHHCCCEEEHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEHHH
ARHYLDYDPKVSLWTALDEFCSWWKAQDIR
HHHHCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]