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The map label for this gene is ybgC [H]

Identifier: 77460627

GI number: 77460627

Start: 4966118

End: 4966585

Strand: Reverse

Name: ybgC [H]

Synonym: Pfl01_4406

Alternate gene names: 77460627

Gene position: 4966585-4966118 (Counterclockwise)

Preceding gene: 77460628

Following gene: 77460626

Centisome position: 77.14

GC content: 59.19

Gene sequence:

>468_bases
ATGCGCGCGCAAAACGGGCTTGAGCCGTTCGCACATCGTTGTCGCGTTTATTACGAGGACACCGATGCGGGCGGCATCGT
GTATTACGTTAATTACCTCAAGTTTATGGAACGGGCTCGAACCGAGCGGCTCCGGGAGCTGGGCTTTGCCCAGTCGGCGC
TGGCAGGGGAGGACCTGTTGTTCGTCGTGCATTCCAGCGAAGCGCGTTATCACGCGCCGGCGCGACTGGATGACGAGCTT
CTGGTAAGCGCTGATGTAATCGAATTGAACCGTGCCAGCCTGCGCTTTCGACAGCAGGTCAGGCGGGCAACGGATAATGT
GCTGCTCTGCGAAGGGCAGTTTCTGGTGGCCTGTGTGCGCACTAACAGTTTGAAACCCCGGGCCCTTCCCGAAGACCTGC
GTGCGGCCTTTGCCGACGCGGTCGGCACGGGTACACACTCAAAGCAGGAGATAAAGCGTGGAAGCTAA

Upstream 100 bases:

>100_bases
GTTTGTACTGTCACAGGACGGTACTTTTGCGGTAAAGCCTTCCAACAATGAAAAACAGTTGCCTGGCCGGATTGGCAACC
CGAGGAGTAAGCACTAGAGT

Downstream 100 bases:

>100_bases
CGTCGTCGACCATTCCTCCATGTGGAGCCTGGTCAGCAATGCCAGCATCGTGGTGCAGTTGGTAATGTTGACTCTGGTGG
CCGCATCGGTGACCTCATGG

Product: 4-hydroxybenzoyl-CoA thioesterase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MRAQNGLEPFAHRCRVYYEDTDAGGIVYYVNYLKFMERARTERLRELGFAQSALAGEDLLFVVHSSEARYHAPARLDDEL
LVSADVIELNRASLRFRQQVRRATDNVLLCEGQFLVACVRTNSLKPRALPEDLRAAFADAVGTGTHSKQEIKRGS

Sequences:

>Translated_155_residues
MRAQNGLEPFAHRCRVYYEDTDAGGIVYYVNYLKFMERARTERLRELGFAQSALAGEDLLFVVHSSEARYHAPARLDDEL
LVSADVIELNRASLRFRQQVRRATDNVLLCEGQFLVACVRTNSLKPRALPEDLRAAFADAVGTGTHSKQEIKRGS
>Mature_155_residues
MRAQNGLEPFAHRCRVYYEDTDAGGIVYYVNYLKFMERARTERLRELGFAQSALAGEDLLFVVHSSEARYHAPARLDDEL
LVSADVIELNRASLRFRQQVRRATDNVLLCEGQFLVACVRTNSLKPRALPEDLRAAFADAVGTGTHSKQEIKRGS

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=128, Percent_Identity=48.4375, Blast_Score=120, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 17518; Mature: 17518

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAQNGLEPFAHRCRVYYEDTDAGGIVYYVNYLKFMERARTERLRELGFAQSALAGEDLL
CCCCCCCCHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEE
FVVHSSEARYHAPARLDDELLVSADVIELNRASLRFRQQVRRATDNVLLCEGQFLVACVR
EEEECCCCCEECCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE
TNSLKPRALPEDLRAAFADAVGTGTHSKQEIKRGS
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCC
>Mature Secondary Structure
MRAQNGLEPFAHRCRVYYEDTDAGGIVYYVNYLKFMERARTERLRELGFAQSALAGEDLL
CCCCCCCCHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEE
FVVHSSEARYHAPARLDDELLVSADVIELNRASLRFRQQVRRATDNVLLCEGQFLVACVR
EEEECCCCCEECCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE
TNSLKPRALPEDLRAAFADAVGTGTHSKQEIKRGS
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]