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The map label for this gene is yfdE [H]

Identifier: 77460604

GI number: 77460604

Start: 4940345

End: 4941691

Strand: Direct

Name: yfdE [H]

Synonym: Pfl01_4383

Alternate gene names: 77460604

Gene position: 4940345-4941691 (Clockwise)

Preceding gene: 77460603

Following gene: 77460606

Centisome position: 76.73

GC content: 64.96

Gene sequence:

>1347_bases
ATGACTGATCTGCTCACGTCCATTCAAGCCGCACTCGGCTTGTCCCCCACGCCGATTCCGTTCACCGGCGAGGGCGCCCT
GCCCTCGGCGTTTGCCGTTACTGACCTTGCCTGCGCGAGCATTGCCGCTGCCGGGCAGGCAGTCGCCGAACTCCTTCAGC
AGCAGACCGGTCACTTGCCCGGCGTAGAAGTCGACCGTCGCCTCGCCTCGTTCTGGTTCGCCACCTCGCTACGACCCATC
GGCTGGGAAGTGCCGCCGCTGTGGGATCCGGTGGCCGGCGACTATGCGACCAAAGACGGCTGGATCCGCCTGCACACCAA
CGCCCCGCATCACCGCGCCGCTGCTGAACGCGTGCTCGGCGCCTGTGCAGACCGCGCAGCGATGGCGGCGAAAGTCGCGC
AATGGGCCAGTGCCGATCTGGAGCAAGCGGTGGTCGAGGCCAAGGGTTGTGCGGCTGAGATGCGCAGCTGGGAACAGTGG
CAGAAACATCCCCAAGGGTTGGCGGTGAATGCCGAACCCTTGGTGCATTTCAGTGACGGGAAAGAAGAAAGTCATCAACC
CTGGCAAGGCTCGGTGGCGCGGCCATTGGCCGGGCTCAAGGTGCTCGATCTGACCCGCGTACTGGCCGGCCCGACCGCCA
GCCGCTTCCTCGCGGGGCTCGGCGCCAACGTGCTGCGCATCGACCCGCCGACCTGGAACGAACCCGGCGTGGTGCCGGAA
GTGACCCTCGGCAAACGTTGTGCGCGACTGGATCTGCATGTGCCGGCAGATCGTGCAGTGTTCGAAAGTTTGCTCAAGGA
TGCCGACATTCTGCTGCACGGCTATCGCGCCGACGCCCTTGAACATCTCGGCTTCGGCGTAGAGCGTCGCCGGCAACTGG
CGCCGGAGCTGATTGATGTCTGCCTCAACGCCTACGGCTGGAGCGGCCCGTGGCAGAACCGTCGGGGCTTCGACAGTCTG
GTGCAGATGAGCAGCGGGATCGCCGAGGCCGGACAGCGCTGGAAGCAGGCGGACAAGCCGACACCCCTGCCGGTGCAGGC
GCTGGATCATGCGACGGGGTATCTGATGGCGGCGAGCGTGATTCGGTTGCTGGCTGAACGGTTACGCAGTGGTCGAGGTG
GATCGGCGCGGTTGTCGCTGGCACGCACGGCGAAGTTGTTGATCGAGCATGGACCGGGGACTGACCAGGCGTTGCTTCCG
GAAAATCCACAGGATCAAAGCTTGAGCGTGGAGCAGACACCATGGGGGCCGGCACATCGGCTTCAGGCGCCGCTGCGTAT
TGCTGGAACGCCGTTGCAGTGGACTTTGCCGGCAACTGAATTGGGTTCACATCGGGCGCAGTGGTGA

Upstream 100 bases:

>100_bases
GCAGCCAGCTCAACGCCCTGGCCAGCCAGCAGATGAAATTGATGGATCAGTTCCGCGTCTGATTTGATCTATGATCAGGC
CCTCTTCCGGAGGGCCTTCG

Downstream 100 bases:

>100_bases
CCTCTCCACCGTTTTCGCGAGAAACCCGAGCATCGCCGGCCAGTCGTAAGGCCCCTGAAAGTCGAGCCGCAATCTCACAG
GGACAACACGCCGCTGTACA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MTDLLTSIQAALGLSPTPIPFTGEGALPSAFAVTDLACASIAAAGQAVAELLQQQTGHLPGVEVDRRLASFWFATSLRPI
GWEVPPLWDPVAGDYATKDGWIRLHTNAPHHRAAAERVLGACADRAAMAAKVAQWASADLEQAVVEAKGCAAEMRSWEQW
QKHPQGLAVNAEPLVHFSDGKEESHQPWQGSVARPLAGLKVLDLTRVLAGPTASRFLAGLGANVLRIDPPTWNEPGVVPE
VTLGKRCARLDLHVPADRAVFESLLKDADILLHGYRADALEHLGFGVERRRQLAPELIDVCLNAYGWSGPWQNRRGFDSL
VQMSSGIAEAGQRWKQADKPTPLPVQALDHATGYLMAASVIRLLAERLRSGRGGSARLSLARTAKLLIEHGPGTDQALLP
ENPQDQSLSVEQTPWGPAHRLQAPLRIAGTPLQWTLPATELGSHRAQW

Sequences:

>Translated_448_residues
MTDLLTSIQAALGLSPTPIPFTGEGALPSAFAVTDLACASIAAAGQAVAELLQQQTGHLPGVEVDRRLASFWFATSLRPI
GWEVPPLWDPVAGDYATKDGWIRLHTNAPHHRAAAERVLGACADRAAMAAKVAQWASADLEQAVVEAKGCAAEMRSWEQW
QKHPQGLAVNAEPLVHFSDGKEESHQPWQGSVARPLAGLKVLDLTRVLAGPTASRFLAGLGANVLRIDPPTWNEPGVVPE
VTLGKRCARLDLHVPADRAVFESLLKDADILLHGYRADALEHLGFGVERRRQLAPELIDVCLNAYGWSGPWQNRRGFDSL
VQMSSGIAEAGQRWKQADKPTPLPVQALDHATGYLMAASVIRLLAERLRSGRGGSARLSLARTAKLLIEHGPGTDQALLP
ENPQDQSLSVEQTPWGPAHRLQAPLRIAGTPLQWTLPATELGSHRAQW
>Mature_447_residues
TDLLTSIQAALGLSPTPIPFTGEGALPSAFAVTDLACASIAAAGQAVAELLQQQTGHLPGVEVDRRLASFWFATSLRPIG
WEVPPLWDPVAGDYATKDGWIRLHTNAPHHRAAAERVLGACADRAAMAAKVAQWASADLEQAVVEAKGCAAEMRSWEQWQ
KHPQGLAVNAEPLVHFSDGKEESHQPWQGSVARPLAGLKVLDLTRVLAGPTASRFLAGLGANVLRIDPPTWNEPGVVPEV
TLGKRCARLDLHVPADRAVFESLLKDADILLHGYRADALEHLGFGVERRRQLAPELIDVCLNAYGWSGPWQNRRGFDSLV
QMSSGIAEAGQRWKQADKPTPLPVQALDHATGYLMAASVIRLLAERLRSGRGGSARLSLARTAKLLIEHGPGTDQALLPE
NPQDQSLSVEQTPWGPAHRLQAPLRIAGTPLQWTLPATELGSHRAQW

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863124, Length=193, Percent_Identity=29.5336787564767, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI300863128, Length=193, Percent_Identity=29.5336787564767, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI300863126, Length=200, Percent_Identity=28, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI266458393, Length=228, Percent_Identity=30.2631578947368, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI266458397, Length=228, Percent_Identity=30.2631578947368, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI266456254, Length=227, Percent_Identity=29.5154185022026, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI42794625, Length=227, Percent_Identity=29.5154185022026, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI87082093, Length=213, Percent_Identity=28.169014084507, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788717, Length=203, Percent_Identity=28.0788177339901, Blast_Score=89, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24648431, Length=195, Percent_Identity=27.6923076923077, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24585488, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 48356; Mature: 48225

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLLTSIQAALGLSPTPIPFTGEGALPSAFAVTDLACASIAAAGQAVAELLQQQTGHLP
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVEVDRRLASFWFATSLRPIGWEVPPLWDPVAGDYATKDGWIRLHTNAPHHRAAAERVLG
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
ACADRAAMAAKVAQWASADLEQAVVEAKGCAAEMRSWEQWQKHPQGLAVNAEPLVHFSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCC
KEESHQPWQGSVARPLAGLKVLDLTRVLAGPTASRFLAGLGANVLRIDPPTWNEPGVVPE
CCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCC
VTLGKRCARLDLHVPADRAVFESLLKDADILLHGYRADALEHLGFGVERRRQLAPELIDV
CHHHHHHHEEEECCCCHHHHHHHHHCCHHHEEECHHHHHHHHHCCCHHHHHHHHHHHHHH
CLNAYGWSGPWQNRRGFDSLVQMSSGIAEAGQRWKQADKPTPLPVQALDHATGYLMAASV
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
IRLLAERLRSGRGGSARLSLARTAKLLIEHGPGTDQALLPENPQDQSLSVEQTPWGPAHR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
LQAPLRIAGTPLQWTLPATELGSHRAQW
CCCCCEECCCCCEEECCHHHHCCCCCCC
>Mature Secondary Structure 
TDLLTSIQAALGLSPTPIPFTGEGALPSAFAVTDLACASIAAAGQAVAELLQQQTGHLP
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GVEVDRRLASFWFATSLRPIGWEVPPLWDPVAGDYATKDGWIRLHTNAPHHRAAAERVLG
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
ACADRAAMAAKVAQWASADLEQAVVEAKGCAAEMRSWEQWQKHPQGLAVNAEPLVHFSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCC
KEESHQPWQGSVARPLAGLKVLDLTRVLAGPTASRFLAGLGANVLRIDPPTWNEPGVVPE
CCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCC
VTLGKRCARLDLHVPADRAVFESLLKDADILLHGYRADALEHLGFGVERRRQLAPELIDV
CHHHHHHHEEEECCCCHHHHHHHHHCCHHHEEECHHHHHHHHHCCCHHHHHHHHHHHHHH
CLNAYGWSGPWQNRRGFDSLVQMSSGIAEAGQRWKQADKPTPLPVQALDHATGYLMAASV
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
IRLLAERLRSGRGGSARLSLARTAKLLIEHGPGTDQALLPENPQDQSLSVEQTPWGPAHR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
LQAPLRIAGTPLQWTLPATELGSHRAQW
CCCCCEECCCCCEEECCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]