| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is eda [H]
Identifier: 77460582
GI number: 77460582
Start: 4913587
End: 4914252
Strand: Reverse
Name: eda [H]
Synonym: Pfl01_4361
Alternate gene names: 77460582
Gene position: 4914252-4913587 (Counterclockwise)
Preceding gene: 77460583
Following gene: 77460581
Centisome position: 76.33
GC content: 65.62
Gene sequence:
>666_bases ATGACAACCCCATCCCCGACCGTTTCCATGGCGGACAAAGTTGCCCTGATCGACAGCCTCTGCGCCAAGGCGCGGATCCT GCCGGTGATCACCATCGCCCGCGAACAGGACGTGCTGCCGCTGGCCGACGCCCTGGCCGCCGGTGGTCTGACCGCGCTGG AAGTGACCCTGCGTTCGCAGTTCGGCCTCAAGGCGATCCAGATCCTGCGCGAACAGCGCCCGGAGCTGGTGACCGGTGCC GGCACCGTGCTCGACCGCAATATGCTGGCCGCGGCCGAAGCCGCCGGTTCGCAGTTCATCGTCACCCCGGGCATCACCCG TGACCTGCTGGAAGCCAGCGTCGAGAGCCCGATCCCGCTGCTGCCGGGCATCAGCAATGCCTCCGGCATCATGGAAGGCT ATGGCCTGGGGTATCGCCGCTTCAAGCTGTTCCCGGCTGAAGTCAGCGGCGGCGTGGCGGCAATCAAGGCCCTCGGCGGC CCGTTCGGCGAAGTGAAATTCTGCCCGACTGGCGGCGTCGGCCCTGCCAACATCAAGAGCTATATGGCGCTGAAAAACGT CATGTGCGTGGGCGGTAGCTGGATGCTCGATCCTGAGTGGATCAAGAACGGCGACTGGGCCCGCATTCAGGAATGCACTG CCGAGGCTCTGGCGCTGCTGGACTGA
Upstream 100 bases:
>100_bases CCGCACTGGCATCCAACGACGTCGCCGCCATGCCGGTTCGCGCGTTTCTGCAACCTACGTTAGAGATTTACTGGTGCCCA TGAGCCAAGGAACAGCCGCT
Downstream 100 bases:
>100_bases TCTTCAACTGACACTTCGTTGTGTGTTCTACGGCTTTACGGTGCGCTTGGTCGGTGCACCGTTTTTTTTTGCCCGAAAAC CTTCGTTATCTCGAGATACA
Product: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
Products: NA
Alternate protein names: KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MTTPSPTVSMADKVALIDSLCAKARILPVITIAREQDVLPLADALAAGGLTALEVTLRSQFGLKAIQILREQRPELVTGA GTVLDRNMLAAAEAAGSQFIVTPGITRDLLEASVESPIPLLPGISNASGIMEGYGLGYRRFKLFPAEVSGGVAAIKALGG PFGEVKFCPTGGVGPANIKSYMALKNVMCVGGSWMLDPEWIKNGDWARIQECTAEALALLD
Sequences:
>Translated_221_residues MTTPSPTVSMADKVALIDSLCAKARILPVITIAREQDVLPLADALAAGGLTALEVTLRSQFGLKAIQILREQRPELVTGA GTVLDRNMLAAAEAAGSQFIVTPGITRDLLEASVESPIPLLPGISNASGIMEGYGLGYRRFKLFPAEVSGGVAAIKALGG PFGEVKFCPTGGVGPANIKSYMALKNVMCVGGSWMLDPEWIKNGDWARIQECTAEALALLD >Mature_220_residues TTPSPTVSMADKVALIDSLCAKARILPVITIAREQDVLPLADALAAGGLTALEVTLRSQFGLKAIQILREQRPELVTGAG TVLDRNMLAAAEAAGSQFIVTPGITRDLLEASVESPIPLLPGISNASGIMEGYGLGYRRFKLFPAEVSGGVAAIKALGGP FGEVKFCPTGGVGPANIKSYMALKNVMCVGGSWMLDPEWIKNGDWARIQECTAEALALLD
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=182, Percent_Identity=47.8021978021978, Blast_Score=189, Evalue=1e-49,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.2.14 [H]
Molecular weight: Translated: 23167; Mature: 23036
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1 ; PS00160 ALDOLASE_KDPG_KHG_2 ; PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPSPTVSMADKVALIDSLCAKARILPVITIAREQDVLPLADALAAGGLTALEVTLRSQ CCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHH FGLKAIQILREQRPELVTGAGTVLDRNMLAAAEAAGSQFIVTPGITRDLLEASVESPIPL CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCC LPGISNASGIMEGYGLGYRRFKLFPAEVSGGVAAIKALGGPFGEVKFCPTGGVGPANIKS CCCCCCCHHHHHHCCCCEEEEEEECHHHCCHHHHHHHHCCCCCCEEECCCCCCCHHHHHH YMALKNVMCVGGSWMLDPEWIKNGDWARIQECTAEALALLD HHHHHHHHEECCCEEECHHHHCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure TTPSPTVSMADKVALIDSLCAKARILPVITIAREQDVLPLADALAAGGLTALEVTLRSQ CCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHH FGLKAIQILREQRPELVTGAGTVLDRNMLAAAEAAGSQFIVTPGITRDLLEASVESPIPL CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCC LPGISNASGIMEGYGLGYRRFKLFPAEVSGGVAAIKALGGPFGEVKFCPTGGVGPANIKS CCCCCCCHHHHHHCCCCEEEEEEECHHHCCHHHHHHHHCCCCCCEEECCCCCCCHHHHHH YMALKNVMCVGGSWMLDPEWIKNGDWARIQECTAEALALLD HHHHHHHHEECCCEEECHHHHCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6988426; 7161801; 974067 [H]