| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is sthA [H]
Identifier: 77460083
GI number: 77460083
Start: 4362990
End: 4364384
Strand: Reverse
Name: sthA [H]
Synonym: Pfl01_3862
Alternate gene names: 77460083
Gene position: 4364384-4362990 (Counterclockwise)
Preceding gene: 77460084
Following gene: 77460080
Centisome position: 67.79
GC content: 60.0
Gene sequence:
>1395_bases ATGGCTGTCTACAACTACGACGTGGTGGTGCTGGGTTCCGGCCCGGCGGGAGAAGGCGCGGCAATGAACGCCGCCAAAGC AGGGCGCAAGGTGGCGATGGTCGATAGCCGTCGCCAGGTCGGCGGCAACTGCACCCACCTGGGCACCATCCCGTCCAAGG CCCTGCGTCACTCGGTGCGGCAGATCATGCAGTTCAACACCAATCCGATGTTCCGTGCGATCGGCGAGCCGCGCTGGTTC TCCTTCCCGGATGTGTTGAAAAGCGCCGAGAAAGTCATCTCCAAGCAAGTCGCTTCGCGTACCGGCTACTACGCCCGTAA CCGCGTCGACGTGTTTTTCGGCACCGGCAGCTTTGCCGACGAGCAAACCATCGAAGTGGTCTGCGCCAACGGCGTGGTCG AAAAACTGGTGGCCAAGCACATCATCATCGCCACCGGTTCGCGTCCTTATCGCCCGGCGGACATCGATTTCCACCACCCG CGTATCTACGATAGCGACACTATCCTCAGCCTCGGCCACACCCCGCGCAAACTGATCGTTTACGGCGCCGGCGTGATCGG TTGCGAATACGCTTCTATCTTCAGTGGTCTGGGCGTGCTGGTCGAGCTGGTGGACAACCGCGGCCAGTTGCTGAGCTTCC TCGACTCGGAAATCTCCCAGGCGTTGAGCTACCACTTCAGCAACAACAACATCACCGTGCGTCACAACGAAGAATATGAC CGCGTCGAAGGCGTGGACAACGGCGTGATCCTGCACCTGAAGTCCGGCAAGAAGATCAAGGCCGATGCCTTGCTCTGGTG CAACGGCCGTACCGGTAACACCGATCAGTTGGGTCTGGAAAACATCGGGGTCAAGGTCAACAGCCGTGGCCAGATCGAAG TCGACGAGAATTACCGTACCTGCGTGCAGAACATCTATGGCGCCGGTGACGTGATCGGCTGGCCGAGCCTGGCCAGTGCC GCCCACGACCAGGGCCGTTCGGCCGCTGGCAGCATCGTCGACAATGGCAGCTGGCGCTTCGTGAATGACGTGCCGACCGG CATCTACACCATTCCGGAGATCAGCTCGATCGGCAAGAACGAGCAGGAACTGACCCAGGCCAAAGTGCCGTATGAAGTGG GCAAGGCGTTCTTCAAGAGCATGGCGCGGGCACAGATCGCCGGCGAGCCGCAAGGCATGCTGAAGATCCTGTTCCACCGT GAAACCCTGGAAGTGCTGGGCGTTCACTGCTTCGGTTATCAGGCGTCGGAGATCGTGCACATCGGTCAGGCGATCATGAA CCAGCCAGGTGAGCTGAATACTCTGAAATACTTCGTCAACACGACGTTCAACTACCCGACCATGGCCGAAGCCTATCGGG TAGCGGCGTACGACGGCCTCAACCGGCTTTTTTGA
Upstream 100 bases:
>100_bases CCGGGTTTTCTACTGGCCCCCAATTGTTCCTTCGCGCCGTCGTTCGGCGTGATTTAGCCGCCGGTGCTGCTGGCACCGCG GCCTGTTCTGAGGAGTACGC
Downstream 100 bases:
>100_bases CGGGCTCCGGCCGGTGGCCTGAGCCGGCCGGGGAGACCGATTTCAGCAATTCCCGAGGGTGGCAGTGGCCAAACCGGGAA AGTCTGTAATCAGGCTGTCA
Product: soluble pyridine nucleotide transhydrogenase
Products: NA
Alternate protein names: STH; NAD(P)(+) transhydrogenase [B-specific] [H]
Number of amino acids: Translated: 464; Mature: 463
Protein sequence:
>464_residues MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWF SFPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHP RIYDSDTILSLGHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEISQALSYHFSNNNITVRHNEEYD RVEGVDNGVILHLKSGKKIKADALLWCNGRTGNTDQLGLENIGVKVNSRGQIEVDENYRTCVQNIYGAGDVIGWPSLASA AHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHR ETLEVLGVHCFGYQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAAYDGLNRLF
Sequences:
>Translated_464_residues MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWF SFPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHP RIYDSDTILSLGHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEISQALSYHFSNNNITVRHNEEYD RVEGVDNGVILHLKSGKKIKADALLWCNGRTGNTDQLGLENIGVKVNSRGQIEVDENYRTCVQNIYGAGDVIGWPSLASA AHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHR ETLEVLGVHCFGYQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAAYDGLNRLF >Mature_463_residues AVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPR IYDSDTILSLGHTPRKLIVYGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEISQALSYHFSNNNITVRHNEEYDR VEGVDNGVILHLKSGKKIKADALLWCNGRTGNTDQLGLENIGVKVNSRGQIEVDENYRTCVQNIYGAGDVIGWPSLASAA HDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKNEQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRE TLEVLGVHCFGYQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAAYDGLNRLF
Specific function: Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI91199540, Length=468, Percent_Identity=31.4102564102564, Blast_Score=199, Evalue=5e-51, Organism=Homo sapiens, GI50301238, Length=467, Percent_Identity=26.9807280513919, Blast_Score=131, Evalue=2e-30, Organism=Homo sapiens, GI22035672, Length=487, Percent_Identity=29.1581108829569, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI291045266, Length=501, Percent_Identity=23.75249500998, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI33519430, Length=446, Percent_Identity=24.2152466367713, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI33519428, Length=446, Percent_Identity=24.2152466367713, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI33519426, Length=446, Percent_Identity=24.2152466367713, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI148277065, Length=388, Percent_Identity=25, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI148277071, Length=393, Percent_Identity=25.4452926208651, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI291045268, Length=370, Percent_Identity=24.5945945945946, Blast_Score=80, Evalue=3e-15, Organism=Escherichia coli, GI87082354, Length=462, Percent_Identity=59.95670995671, Blast_Score=597, Evalue=1e-172, Organism=Escherichia coli, GI1786307, Length=459, Percent_Identity=31.8082788671024, Blast_Score=189, Evalue=5e-49, Organism=Escherichia coli, GI1789915, Length=439, Percent_Identity=29.3849658314351, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI87081717, Length=474, Percent_Identity=26.5822784810127, Blast_Score=143, Evalue=3e-35, Organism=Caenorhabditis elegans, GI32565766, Length=467, Percent_Identity=30.6209850107066, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI17557007, Length=481, Percent_Identity=24.1164241164241, Blast_Score=112, Evalue=5e-25, Organism=Caenorhabditis elegans, GI71983429, Length=414, Percent_Identity=26.8115942028986, Blast_Score=99, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71983419, Length=414, Percent_Identity=26.8115942028986, Blast_Score=98, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17559934, Length=221, Percent_Identity=28.0542986425339, Blast_Score=71, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6321091, Length=477, Percent_Identity=29.979035639413, Blast_Score=195, Evalue=1e-50, Organism=Saccharomyces cerevisiae, GI6325166, Length=468, Percent_Identity=29.4871794871795, Blast_Score=156, Evalue=6e-39, Organism=Saccharomyces cerevisiae, GI6325240, Length=472, Percent_Identity=28.1779661016949, Blast_Score=148, Evalue=2e-36, Organism=Drosophila melanogaster, GI21358499, Length=471, Percent_Identity=32.0594479830149, Blast_Score=203, Evalue=2e-52, Organism=Drosophila melanogaster, GI24640553, Length=479, Percent_Identity=28.6012526096033, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI24640549, Length=479, Percent_Identity=28.6012526096033, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI24640551, Length=479, Percent_Identity=28.6012526096033, Blast_Score=131, Evalue=8e-31, Organism=Drosophila melanogaster, GI17737741, Length=495, Percent_Identity=28.2828282828283, Blast_Score=119, Evalue=6e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 - InterPro: IPR022962 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.6.1.1 [H]
Molecular weight: Translated: 50891; Mature: 50760
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR CEEEEEEEEEECCCCCCCCCCCCHHHCCCEEEEECCHHHCCCCEEEECCCCHHHHHHHHH QIMQFNTNPMFRAIGEPRWFSFPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFAD HHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCCC EQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIV CCEEEEEECCHHHHHHHHCEEEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCEEEE YGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEISQALSYHFSNNNITVRHNEEYD EECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCEEEEEECCCHH RVEGVDNGVILHLKSGKKIKADALLWCNGRTGNTDQLGLENIGVKVNSRGQIEVDENYRT HHCCCCCCEEEEECCCCEEECCEEEEECCCCCCCCCCCHHHCCEEECCCCCEEECCHHHH CVQNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKN HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCEEEECCCCCCEEECCCHHHCCCC EQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEVLGVHCFGYQASEIVH HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHH IGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAAYDGLNRLF HHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure AVYNYDVVVLGSGPAGEGAAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVR EEEEEEEEEECCCCCCCCCCCCHHHCCCEEEEECCHHHCCCCEEEECCCCHHHHHHHHH QIMQFNTNPMFRAIGEPRWFSFPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFAD HHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCCC EQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIV CCEEEEEECCHHHHHHHHCEEEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCEEEE YGAGVIGCEYASIFSGLGVLVELVDNRGQLLSFLDSEISQALSYHFSNNNITVRHNEEYD EECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCEEEEEECCCHH RVEGVDNGVILHLKSGKKIKADALLWCNGRTGNTDQLGLENIGVKVNSRGQIEVDENYRT HHCCCCCCEEEEECCCCEEECCEEEEECCCCCCCCCCCHHHCCEEECCCCCEEECCHHHH CVQNIYGAGDVIGWPSLASAAHDQGRSAAGSIVDNGSWRFVNDVPTGIYTIPEISSIGKN HHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCEEEECCCCCCEEECCCHHHCCCC EQELTQAKVPYEVGKAFFKSMARAQIAGEPQGMLKILFHRETLEVLGVHCFGYQASEIVH HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHH IGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAAYDGLNRLF HHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA