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The map label for this gene is ykgD [C]

Identifier: 77459777

GI number: 77459777

Start: 4027361

End: 4028182

Strand: Reverse

Name: ykgD [C]

Synonym: Pfl01_3555

Alternate gene names: 77459777

Gene position: 4028182-4027361 (Counterclockwise)

Preceding gene: 77459779

Following gene: 77459775

Centisome position: 62.56

GC content: 63.26

Gene sequence:

>822_bases
ATGGATCGCCTGTCCACCTTGCTCAGTCATTTCGGCGTCAATGCCGGTACGTTTCACAGCGGCACGTTCTGCGGGGTGAG
CGCCTACGGCGGCGATCAGGTGTGCGGGCATGTGCACCTGTTGCAGGCGGGGGAATTGTTGCTCAAGCCGGGCAATGATC
CTGAACTCTCGCTCAATGAACCGACCCTGATCTTTTTCCCGCGCCCCATGGCCCATCGCCTGTTCGCCAACGAAGCCATG
GGCACGCAACTGGTGTGCGCCTCACTGACCTTCGACGGCGGCGCGGGCAATGCTTTGGCGGCAGCGCTACCGGATTATCT
GGTGCTGAAACTCGCTGACCTTCCCGAAATGGCCAACACCCTGGAGTGGCTGTTCAAGGAAGCTTTCGACGGACACTGCG
GGCGCGAAGCGGTGATGGACCGGCTGTTCGAGTTGCTGGTGATTCTGCTGTTGCGCCACCTCATCAGCAGCCAGAACCAG
CAGCCGGGCATGATGGCGGGGCTGGCCGATCCGAAGATTTCCCGAGCCTTGAACCTGATGCACGAGCAGCCGGCCAAGGC
CTGGAGTGTCGCCGAACTGGCAAGCGCGGCCAATCTGTCCCGCGCCGGTTTTGCCGAACATTTCCGGCGGGTAGTGGGGC
AGACGCCGGTGGATTATCTGGTGAACTGGCGGATCAGCCTCGCGCAGAAACGCCTGCGCGAGGGACGGCCGATCGCCCTG
ATCGCCGAAGAGGTCGGCTATGAAAGTCCCTCGGCGCTGGCCCGGGCGTTTCGGCGCAAGACCGGGCTCAGCCCGCGTGA
ATGGAAGGCCGGTGCGAGCTGA

Upstream 100 bases:

>100_bases
GGGATGGAGGTCATGTTATTGAGCGCGGCTGGTGCTTTGGGTGCAAATCGTCGAGGATATGCGACAGATCGTCCAAACCT
GCCGCCGGAGGAGTCCTTCA

Downstream 100 bases:

>100_bases
AGACTATCTGGCGAATTTCTTCGCCCCGGCCACGCACAGGATCACCCCCAGCGTGACCACCAACATGCCGACGCTGACAT
GTTCATGCAGCAACGTCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDRLSTLLSHFGVNAGTFHSGTFCGVSAYGGDQVCGHVHLLQAGELLLKPGNDPELSLNEPTLIFFPRPMAHRLFANEAM
GTQLVCASLTFDGGAGNALAAALPDYLVLKLADLPEMANTLEWLFKEAFDGHCGREAVMDRLFELLVILLLRHLISSQNQ
QPGMMAGLADPKISRALNLMHEQPAKAWSVAELASAANLSRAGFAEHFRRVVGQTPVDYLVNWRISLAQKRLREGRPIAL
IAEEVGYESPSALARAFRRKTGLSPREWKAGAS

Sequences:

>Translated_273_residues
MDRLSTLLSHFGVNAGTFHSGTFCGVSAYGGDQVCGHVHLLQAGELLLKPGNDPELSLNEPTLIFFPRPMAHRLFANEAM
GTQLVCASLTFDGGAGNALAAALPDYLVLKLADLPEMANTLEWLFKEAFDGHCGREAVMDRLFELLVILLLRHLISSQNQ
QPGMMAGLADPKISRALNLMHEQPAKAWSVAELASAANLSRAGFAEHFRRVVGQTPVDYLVNWRISLAQKRLREGRPIAL
IAEEVGYESPSALARAFRRKTGLSPREWKAGAS
>Mature_273_residues
MDRLSTLLSHFGVNAGTFHSGTFCGVSAYGGDQVCGHVHLLQAGELLLKPGNDPELSLNEPTLIFFPRPMAHRLFANEAM
GTQLVCASLTFDGGAGNALAAALPDYLVLKLADLPEMANTLEWLFKEAFDGHCGREAVMDRLFELLVILLLRHLISSQNQ
QPGMMAGLADPKISRALNLMHEQPAKAWSVAELASAANLSRAGFAEHFRRVVGQTPVDYLVNWRISLAQKRLREGRPIAL
IAEEVGYESPSALARAFRRKTGLSPREWKAGAS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=235, Percent_Identity=31.4893617021277, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082197, Length=96, Percent_Identity=35.4166666666667, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29759; Mature: 29759

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLSTLLSHFGVNAGTFHSGTFCGVSAYGGDQVCGHVHLLQAGELLLKPGNDPELSLNE
CCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCEECCC
PTLIFFPRPMAHRLFANEAMGTQLVCASLTFDGGAGNALAAALPDYLVLKLADLPEMANT
CEEEEECCHHHHHHHHHHHCCHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHH
LEWLFKEAFDGHCGREAVMDRLFELLVILLLRHLISSQNQQPGMMAGLADPKISRALNLM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHH
HEQPAKAWSVAELASAANLSRAGFAEHFRRVVGQTPVDYLVNWRISLAQKRLREGRPIAL
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
IAEEVGYESPSALARAFRRKTGLSPREWKAGAS
EEHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDRLSTLLSHFGVNAGTFHSGTFCGVSAYGGDQVCGHVHLLQAGELLLKPGNDPELSLNE
CCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCEECCC
PTLIFFPRPMAHRLFANEAMGTQLVCASLTFDGGAGNALAAALPDYLVLKLADLPEMANT
CEEEEECCHHHHHHHHHHHCCHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHH
LEWLFKEAFDGHCGREAVMDRLFELLVILLLRHLISSQNQQPGMMAGLADPKISRALNLM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHH
HEQPAKAWSVAELASAANLSRAGFAEHFRRVVGQTPVDYLVNWRISLAQKRLREGRPIAL
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
IAEEVGYESPSALARAFRRKTGLSPREWKAGAS
EEHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]