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The map label for this gene is yjiR [C]

Identifier: 77459775

GI number: 77459775

Start: 4025043

End: 4026461

Strand: Reverse

Name: yjiR [C]

Synonym: Pfl01_3553

Alternate gene names: 77459775

Gene position: 4026461-4025043 (Counterclockwise)

Preceding gene: 77459777

Following gene: 77459774

Centisome position: 62.54

GC content: 63.78

Gene sequence:

>1419_bases
ATGTGGCGCTCGGAGGTGGGTTGCGTCGAATCGATCCTAGGGCTGAGAATCAAGACAATCAAAAAATTGTCATGGATACA
GCCCGACATGCCGCGCTCCCGCTACAAGACCCTTGTCGACACCTTTGCGGCTGACATCCGCGCCGGCCGACTGCTGCCTG
GCACTCGCTTACCGACTCACCGGCAATTGGCGGCCAGCGAAGGGCTGGCGCTGGTCACCGCGTCGCGGGTGTACGCCGAG
CTCGAGGCCATGGGCCTGGTCAGCGGCGAAGCCGGGCGCGGCACGTTTGTGCGGGAAACGTCGTTGTTGCCAGGGCAGGG
CATCGACCAGAAAGACGTCGCGGTGGGCATGATCGACCTCAACTTCAACTACCCATCATTGCCGGGGCAGGCCGAGTTGC
TGCGCACCGCGTTGCGGCAGCTGGCGCTGTCCGGCGACCTCGAAGCGCTGCTGCGCTATCAGCCCCACGCCGGTCGCCAG
CATGAAAGGGTCTCGGTGGCGCGGCATCTGCAAACACGCGGTTTGAGTGTCGAGGCCGAGCAGGTGTTGATCGTCAACGG
CGCGCAGCAAGGGCTGGCGGTGACGCTGATGGCGCTGCTCAAGCCTGGCGATGTGATTGCCGCCGACGCCTTGACCTATT
CCGGATTCAAAGTGCTGGCCGAAGCGCTGCACCTGGAAGTGGTGGCGATTCCCGTGACTGAAGGCGGGCCGGATCTGACA
GCCCTCGACAAACTCTGCCGCCAACGACCGGTGCGTGCGGTGTACAGCATGCCGACCCTGCACAACCCACTGGGCTGGGT
GATGCCTTTGGAGCAACGTGAGGATTTGATCGCGATTGCCCGCCGACATGATCTGACAATCATCGAGGACGCGGCCTACG
CCTTTCTGGTCGATAACCCGCCACCCCCGTTGGCGGTTCTGGCACCGGAACGCACGGTCTACGTGTCGGGCCTGTCGAAA
AACATCGCCACCGGCCTGCGTGTCGGTTTCATCGCCGCGCCGGTCGAGCGGGTGGCGGCGCTGGAGCGGATCATCCGCGC
CACTACCTGGAACACCCCCGGCGTGATGACCGCCATCGCCTGCGGCTGGCTCGACGACGGCACCGTCACCTTGCTCGAAG
CGCAAAAGCGTAGCGACGCCCAGGTCAGGCAAACCCTCGCTGCGCAGGTTCTCGAAGGCCTCCCCACTGTCGGCCATCCT
TCTTCGTATTTCCTCTGGCTGCCGCTACCGGAAGACGTTCGGGCCGACCATATCGTGGTCGAGTTGATGCACGAACAGGT
TTCCGTCACCACCGCCGAACCTTTCACCGTGTCTACTCATGTGCCCCACGCGATTCGCCTGGCGCTGGGCTCGGTGGACA
TGCTTGTCCTGCGTCAAGCCTTGCTCAAAGTCCGCCAGGTTGTGGGCGCCTACCTGTAG

Upstream 100 bases:

>100_bases
GGCAACGAGCCGCTGAAGATCACGACGCCGATGAAGCCATTGATCCAGCCGCTGGTTTTTTCCAGGGCCGGTGTGCCGAG
GTGGGAGGTTCGTTCCATGG

Downstream 100 bases:

>100_bases
CGCAAGTGACCGCGCGGGATTACCCTTGGCGCCGCCGAAGATCTGGAAAACCCTGATGAAAAACGCTGCACTGACTTTCG
CCCTGATCCTCAACGCAGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MWRSEVGCVESILGLRIKTIKKLSWIQPDMPRSRYKTLVDTFAADIRAGRLLPGTRLPTHRQLAASEGLALVTASRVYAE
LEAMGLVSGEAGRGTFVRETSLLPGQGIDQKDVAVGMIDLNFNYPSLPGQAELLRTALRQLALSGDLEALLRYQPHAGRQ
HERVSVARHLQTRGLSVEAEQVLIVNGAQQGLAVTLMALLKPGDVIAADALTYSGFKVLAEALHLEVVAIPVTEGGPDLT
ALDKLCRQRPVRAVYSMPTLHNPLGWVMPLEQREDLIAIARRHDLTIIEDAAYAFLVDNPPPPLAVLAPERTVYVSGLSK
NIATGLRVGFIAAPVERVAALERIIRATTWNTPGVMTAIACGWLDDGTVTLLEAQKRSDAQVRQTLAAQVLEGLPTVGHP
SSYFLWLPLPEDVRADHIVVELMHEQVSVTTAEPFTVSTHVPHAIRLALGSVDMLVLRQALLKVRQVVGAYL

Sequences:

>Translated_472_residues
MWRSEVGCVESILGLRIKTIKKLSWIQPDMPRSRYKTLVDTFAADIRAGRLLPGTRLPTHRQLAASEGLALVTASRVYAE
LEAMGLVSGEAGRGTFVRETSLLPGQGIDQKDVAVGMIDLNFNYPSLPGQAELLRTALRQLALSGDLEALLRYQPHAGRQ
HERVSVARHLQTRGLSVEAEQVLIVNGAQQGLAVTLMALLKPGDVIAADALTYSGFKVLAEALHLEVVAIPVTEGGPDLT
ALDKLCRQRPVRAVYSMPTLHNPLGWVMPLEQREDLIAIARRHDLTIIEDAAYAFLVDNPPPPLAVLAPERTVYVSGLSK
NIATGLRVGFIAAPVERVAALERIIRATTWNTPGVMTAIACGWLDDGTVTLLEAQKRSDAQVRQTLAAQVLEGLPTVGHP
SSYFLWLPLPEDVRADHIVVELMHEQVSVTTAEPFTVSTHVPHAIRLALGSVDMLVLRQALLKVRQVVGAYL
>Mature_472_residues
MWRSEVGCVESILGLRIKTIKKLSWIQPDMPRSRYKTLVDTFAADIRAGRLLPGTRLPTHRQLAASEGLALVTASRVYAE
LEAMGLVSGEAGRGTFVRETSLLPGQGIDQKDVAVGMIDLNFNYPSLPGQAELLRTALRQLALSGDLEALLRYQPHAGRQ
HERVSVARHLQTRGLSVEAEQVLIVNGAQQGLAVTLMALLKPGDVIAADALTYSGFKVLAEALHLEVVAIPVTEGGPDLT
ALDKLCRQRPVRAVYSMPTLHNPLGWVMPLEQREDLIAIARRHDLTIIEDAAYAFLVDNPPPPLAVLAPERTVYVSGLSK
NIATGLRVGFIAAPVERVAALERIIRATTWNTPGVMTAIACGWLDDGTVTLLEAQKRSDAQVRQTLAAQVLEGLPTVGHP
SSYFLWLPLPEDVRADHIVVELMHEQVSVTTAEPFTVSTHVPHAIRLALGSVDMLVLRQALLKVRQVVGAYL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=215, Percent_Identity=29.7674418604651, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI33469970, Length=215, Percent_Identity=29.7674418604651, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1790797, Length=468, Percent_Identity=25.2136752136752, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1787710, Length=446, Percent_Identity=24.8878923766816, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1788722, Length=264, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51374; Mature: 51374

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRSEVGCVESILGLRIKTIKKLSWIQPDMPRSRYKTLVDTFAADIRAGRLLPGTRLPTH
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
RQLAASEGLALVTASRVYAELEAMGLVSGEAGRGTFVRETSLLPGQGIDQKDVAVGMIDL
HHHHHCCCEEEEEHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEE
NFNYPSLPGQAELLRTALRQLALSGDLEALLRYQPHAGRQHERVSVARHLQTRGLSVEAE
ECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEECC
QVLIVNGAQQGLAVTLMALLKPGDVIAADALTYSGFKVLAEALHLEVVAIPVTEGGPDLT
EEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHH
ALDKLCRQRPVRAVYSMPTLHNPLGWVMPLEQREDLIAIARRHDLTIIEDAAYAFLVDNP
HHHHHHHHCCHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEECCEEEEEECCC
PPPLAVLAPERTVYVSGLSKNIATGLRVGFIAAPVERVAALERIIRATTWNTPGVMTAIA
CCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
CGWLDDGTVTLLEAQKRSDAQVRQTLAAQVLEGLPTVGHPSSYFLWLPLPEDVRADHIVV
HCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHH
ELMHEQVSVTTAEPFTVSTHVPHAIRLALGSVDMLVLRQALLKVRQVVGAYL
HHHHHHHEEEECCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWRSEVGCVESILGLRIKTIKKLSWIQPDMPRSRYKTLVDTFAADIRAGRLLPGTRLPTH
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
RQLAASEGLALVTASRVYAELEAMGLVSGEAGRGTFVRETSLLPGQGIDQKDVAVGMIDL
HHHHHCCCEEEEEHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEE
NFNYPSLPGQAELLRTALRQLALSGDLEALLRYQPHAGRQHERVSVARHLQTRGLSVEAE
ECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEECC
QVLIVNGAQQGLAVTLMALLKPGDVIAADALTYSGFKVLAEALHLEVVAIPVTEGGPDLT
EEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHH
ALDKLCRQRPVRAVYSMPTLHNPLGWVMPLEQREDLIAIARRHDLTIIEDAAYAFLVDNP
HHHHHHHHCCHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEECCEEEEEECCC
PPPLAVLAPERTVYVSGLSKNIATGLRVGFIAAPVERVAALERIIRATTWNTPGVMTAIA
CCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
CGWLDDGTVTLLEAQKRSDAQVRQTLAAQVLEGLPTVGHPSSYFLWLPLPEDVRADHIVV
HCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHH
ELMHEQVSVTTAEPFTVSTHVPHAIRLALGSVDMLVLRQALLKVRQVVGAYL
HHHHHHHEEEECCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]