| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yfbT [H]
Identifier: 77459750
GI number: 77459750
Start: 4006626
End: 4007294
Strand: Reverse
Name: yfbT [H]
Synonym: Pfl01_3528
Alternate gene names: 77459750
Gene position: 4007294-4006626 (Counterclockwise)
Preceding gene: 77459751
Following gene: 77459748
Centisome position: 62.24
GC content: 64.42
Gene sequence:
>669_bases TTGTCTGCTCACGATGCTGTTTTCAACCGCGCGTTCGGCGCGTTCCTGTTCGACATGGACGGCACCGTCCTCAATTCCAT CGCCGCCGCCGAGCGGATCTGGTCCGCCTGGGCCGTGCGCCACGGGGTGAACGTCGAAACGTTCCTGCCGACCATCCATG GCGTGCGCGCCATCGACACCATCACGCGTTTGAACCTGCCGGGCGTGGACGCCGAGGCGCAAGCGGCGTTCATCACCGAG GCGGAAATCGAAGACGTCGAAGGCATCGTCGAGATCCCCGGCGCGGCAGCGTTTCTCAAATCGTTGCCGGCGGATCGCTG GGCCATGGTGACCTCGGCGCCACGGGATCTGGCGTTGCGGCGGATGGGCGCGGCGGGGATTCCTGAACCGGCGGTGATGA TCACCGCTGAAGATGTGACCGCTGGCAAACCGGATCCGGCCGGTTATCGTCTGGCGGCCAGACGCCTGGGGCTGGAGCCG GCGGATTGCCTGATTTTCGAAGACGCCACTGTCGGTATTCAGGCCGCTGAAGCCGCGGGTGCGCCGTTGATGATCATCAC CACGACTCACCAGCATCCGCTCGAAACCGCCCACGCGACCATCGCCAGTTACCGCGACATTGCGCTGAGCATCGACAGCG ACGGCCAGTTGCGTCTGCAACCTCAATAA
Upstream 100 bases:
>100_bases CGGTGCGTTCAAATCCAAGGCGCCGCGTCTGCACTGAAGCATCCCGCAGGTGCTACATTGCCGGGCATCGTTGCCCGGCC CCTTGCGAGGAAGTGATCTT
Downstream 100 bases:
>100_bases ACCCCGGGCAGCAATCGCCAGCTGCGGGCGCAATAAGCGTCGTATTCGGCGCCGAACTGCGTGCGCAGCAAGGCCTCTTC GGAGTGGATGCGGGCGATCA
Product: HAD family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSAHDAVFNRAFGAFLFDMDGTVLNSIAAAERIWSAWAVRHGVNVETFLPTIHGVRAIDTITRLNLPGVDAEAQAAFITE AEIEDVEGIVEIPGAAAFLKSLPADRWAMVTSAPRDLALRRMGAAGIPEPAVMITAEDVTAGKPDPAGYRLAARRLGLEP ADCLIFEDATVGIQAAEAAGAPLMIITTTHQHPLETAHATIASYRDIALSIDSDGQLRLQPQ
Sequences:
>Translated_222_residues MSAHDAVFNRAFGAFLFDMDGTVLNSIAAAERIWSAWAVRHGVNVETFLPTIHGVRAIDTITRLNLPGVDAEAQAAFITE AEIEDVEGIVEIPGAAAFLKSLPADRWAMVTSAPRDLALRRMGAAGIPEPAVMITAEDVTAGKPDPAGYRLAARRLGLEP ADCLIFEDATVGIQAAEAAGAPLMIITTTHQHPLETAHATIASYRDIALSIDSDGQLRLQPQ >Mature_221_residues SAHDAVFNRAFGAFLFDMDGTVLNSIAAAERIWSAWAVRHGVNVETFLPTIHGVRAIDTITRLNLPGVDAEAQAAFITEA EIEDVEGIVEIPGAAAFLKSLPADRWAMVTSAPRDLALRRMGAAGIPEPAVMITAEDVTAGKPDPAGYRLAARRLGLEPA DCLIFEDATVGIQAAEAAGAPLMIITTTHQHPLETAHATIASYRDIALSIDSDGQLRLQPQ
Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrate glucose 6-phosphate [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI87082080, Length=211, Percent_Identity=37.914691943128, Blast_Score=120, Evalue=5e-29, Organism=Escherichia coli, GI1789046, Length=175, Percent_Identity=29.7142857142857, Blast_Score=62, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6321834, Length=200, Percent_Identity=31.5, Blast_Score=94, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6321833, Length=197, Percent_Identity=32.48730964467, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6320905, Length=185, Percent_Identity=32.4324324324324, Blast_Score=76, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6322136, Length=188, Percent_Identity=32.4468085106383, Blast_Score=72, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 - InterPro: IPR023198 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 23604; Mature: 23473
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS01228 COF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHDAVFNRAFGAFLFDMDGTVLNSIAAAERIWSAWAVRHGVNVETFLPTIHGVRAIDT CCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ITRLNLPGVDAEAQAAFITEAEIEDVEGIVEIPGAAAFLKSLPADRWAMVTSAPRDLALR HHHCCCCCCCCCCCEEEEECCHHHHCCCEEECCCHHHHHHHCCCCCEEEECCCCHHHHHH RMGAAGIPEPAVMITAEDVTAGKPDPAGYRLAARRLGLEPADCLIFEDATVGIQAAEAAG HHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCEEEHHCCC APLMIITTTHQHPLETAHATIASYRDIALSIDSDGQLRLQPQ CCEEEEEECCCCCHHHHHHHHHHHCEEEEEECCCCEEEECCC >Mature Secondary Structure SAHDAVFNRAFGAFLFDMDGTVLNSIAAAERIWSAWAVRHGVNVETFLPTIHGVRAIDT CCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ITRLNLPGVDAEAQAAFITEAEIEDVEGIVEIPGAAAFLKSLPADRWAMVTSAPRDLALR HHHCCCCCCCCCCCEEEEECCHHHHCCCEEECCCHHHHHHHCCCCCEEEECCCCHHHHHH RMGAAGIPEPAVMITAEDVTAGKPDPAGYRLAARRLGLEPADCLIFEDATVGIQAAEAAG HHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCEEEHHCCC APLMIITTTHQHPLETAHATIASYRDIALSIDSDGQLRLQPQ CCEEEEEECCCCCHHHHHHHHHHHCEEEEEECCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 10493123 [H]