| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is malT [C]
Identifier: 77459645
GI number: 77459645
Start: 3902860
End: 3904350
Strand: Reverse
Name: malT [C]
Synonym: Pfl01_3423
Alternate gene names: 77459645
Gene position: 3904350-3902860 (Counterclockwise)
Preceding gene: 77459646
Following gene: 77459644
Centisome position: 60.64
GC content: 61.57
Gene sequence:
>1491_bases ATGAGCCGGGACGTCCTGACCACCGAAACCAATCGCCGTCAATTGCAGCAGATCATTGCCGGCCTGTCCGACGGGGTGAT TCTGCTGGAGCTCGACCAGACGATTCTCTGGGCCAACGAAGCCGCGCTGGCGATGCATGGCGTCAGCCGGATCGGCGAGC TGGGCAACAACGCCGGGGAATACGTCGAGCGCTTCAACCTGCGGTATCGCAACAACCACACGCTGACGCCGGAGCAATAC CCGATCAGCCGTGTGGCGACCGGTGAAACGTTCAGTGATGTGCTGGTGGAGGTTTCCCCGCGCAGCGATGAAGAACGCAC CTGGGTGCACAGCGTGCGCAGCATGGTGCTGACCGATCGCGACGGCGACATCGAGTCGCTGGTGCTGATCATGAGCGACG TCACCGACTGGGCCAATGCCGAACAGCGCTTCGAAAAAACCTTCAACGCCAACCCCGCGCCGGCGGTGATCTGCCGCCTC AGCGATCTGCGTTACATCAAGGTCAATCCGGGTTTTCTGGAAATGACCGGTTACACCCGCGATCAGGTGATCGGCGCTTC CACTTATGAGCTGGACATTCTCGAACAGGCCGAGCGCAAGGACCTGGCGATCCAGCGCCTGCGCGATGTCGCGACGATCC CGCAGATGCAGGCCGAGCTGCGATTGCCGGACGGTGGCAGTAAACAGGTGATCGTCGCGGGGCAGCCGCTGGTGCTCAAT GACGAGGATTGCATGCTGTTTTCGTTCGTCGACATGGAGCTCAGGCATAAGGCCGAAGTCGCCCTGCGCCAGAGTGAAGA GCGGTTCGCCAAGGCCTTTCGCCTGACGCCGGTACCGATCCTGATTTGCAGCGCCGATGAGCAGCGGCTGATCGACGTCA ATCAGGCCTTTCTCGATACCTTGGCTTACGAGAGCGACGACGTGCTCGGCAAGACCGTCGCGCAACTGGACTTCATCGAT GAACCGGCGGAACGCGCCCGGTTACTGGCGGCACTGGAGAAAACCGGCCGCGTTGACCGCGTCGATATGCGGATCCGCAG GAAAGACGCCGAGCTGCTGGAGTGCGCGATGTCCGCCGACACCGTCAACATCCAGGACGCGGTGTGCTATCTGCTGGTGC TGATGGACATCACCGAGCGCAAGCGCACCGAGCTTGAGCTGGTGGCGGCGATTGAAGAAGTAATGAAGGATGCATCCTGG TTCAGTCGGACGTTGATCGAAAAGCTGGCCAATGTGAAGAAGGTCAACTCGCCGCAGCTGCCGAGCGTGTCGTTCACCGA TCTGACGGCCCGGGAGCGTGATGTGCTGGCGCTGATCTGTGAGGGGCTGGCGGACAAGGAGATTGCTGCGCGGCTGAAGC TGGCGCCGAACACGGTGCGCAATCATGTGGCGACGGTGTATTCGAAGCTGGATGTGCACAGTCGAAGCGAGGCGATTGTC TGGGCTCGCGAGCGCGGGTTGTTTTCGGGGGGAGGTCGGGGGCAGCGGTAA
Upstream 100 bases:
>100_bases TGGTCGATCACTCATCGCGGTAATCAGGGACAAAGTTGCCCGGCACGATCACAACCGCCTGCGGTCGTAAACTTCACATG CGCGAACTTGTGGAGAACCA
Downstream 100 bases:
>100_bases GGTGCAAATGCACTAGTTCATGGGGTGCAAATTCGGGTGTCTGGCGGGGCGGGCTGTTCTTAGTCTGGTGAGGTGCGATG CGGGTTTTGTTCGTGATCGT
Product: sensor protein
Products: NA
Alternate protein names: LuxR Family Transcriptional Regulator; PAS/PAC Sensor Signal Transduction Histidine Kinase; Multi-Sensor Hybrid Histidine Kinase; PAS Fold Family; PAS/PAC Sensor Protein; Transcriptional Regulator LuxR Family; Sensory Box Histidine Kinase; Sensory Box Protein; Signal Transduction Histidine Kinase; Two Component Transcriptional Regulator LuxR Family; PAS/PAC Sensor Hybrid Histidine Kinase; Two-Component System Response Regulator; Nitrate/Nitrite Response Regulator Protein NarL; Transcriptional Regulator LuxR Family Protein; Two-Component Hybrid Sensor And Regulator; Pas/Pac Sensor Signal Transduction Histidine Kinase; PAS Sensor Protein; Diguanylate Cyclase/Phosphodiesterase; Transcriptional Regulator; Chemotaxis Methyltransferase Protein; Signaling GGDEF/EAL Domain-Containing Protein; Diguanylate Cyclase With PAS/PAC Sensor; Sensor Protein; LuxR Family Two Component Transcriptional Regulator; PasGgdef; Sensory Box-Containing Diguanylate Cyclase; Sensory Box/GGDEF Domain/EAL Domain Protein; Sensory Box Transcriptional Regulator; Sensor Protein PAS/PAS Domain-Containing Protein; Sigma-54 Dependent Trancsriptional Regulator; Sensory Box; Signal Transduction Histidine Kinase-Like Protein; LuxR Family Regulatory Protein; Sensory Transduction Histidine Kinase; Sensory Box GGDEF/EAL Domain-Containing Protein; Histidine Kinase Sensor Protein; Signaling Protein; FOG PAS/PAC Domain Protein; Response Regulator Receiver Protein; Hybrid Histidine Kinase; Sensory/Regulatory Protein RpfC
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MSRDVLTTETNRRQLQQIIAGLSDGVILLELDQTILWANEAALAMHGVSRIGELGNNAGEYVERFNLRYRNNHTLTPEQY PISRVATGETFSDVLVEVSPRSDEERTWVHSVRSMVLTDRDGDIESLVLIMSDVTDWANAEQRFEKTFNANPAPAVICRL SDLRYIKVNPGFLEMTGYTRDQVIGASTYELDILEQAERKDLAIQRLRDVATIPQMQAELRLPDGGSKQVIVAGQPLVLN DEDCMLFSFVDMELRHKAEVALRQSEERFAKAFRLTPVPILICSADEQRLIDVNQAFLDTLAYESDDVLGKTVAQLDFID EPAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSADTVNIQDAVCYLLVLMDITERKRTELELVAAIEEVMKDASW FSRTLIEKLANVKKVNSPQLPSVSFTDLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIV WARERGLFSGGGRGQR
Sequences:
>Translated_496_residues MSRDVLTTETNRRQLQQIIAGLSDGVILLELDQTILWANEAALAMHGVSRIGELGNNAGEYVERFNLRYRNNHTLTPEQY PISRVATGETFSDVLVEVSPRSDEERTWVHSVRSMVLTDRDGDIESLVLIMSDVTDWANAEQRFEKTFNANPAPAVICRL SDLRYIKVNPGFLEMTGYTRDQVIGASTYELDILEQAERKDLAIQRLRDVATIPQMQAELRLPDGGSKQVIVAGQPLVLN DEDCMLFSFVDMELRHKAEVALRQSEERFAKAFRLTPVPILICSADEQRLIDVNQAFLDTLAYESDDVLGKTVAQLDFID EPAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSADTVNIQDAVCYLLVLMDITERKRTELELVAAIEEVMKDASW FSRTLIEKLANVKKVNSPQLPSVSFTDLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIV WARERGLFSGGGRGQR >Mature_495_residues SRDVLTTETNRRQLQQIIAGLSDGVILLELDQTILWANEAALAMHGVSRIGELGNNAGEYVERFNLRYRNNHTLTPEQYP ISRVATGETFSDVLVEVSPRSDEERTWVHSVRSMVLTDRDGDIESLVLIMSDVTDWANAEQRFEKTFNANPAPAVICRLS DLRYIKVNPGFLEMTGYTRDQVIGASTYELDILEQAERKDLAIQRLRDVATIPQMQAELRLPDGGSKQVIVAGQPLVLND EDCMLFSFVDMELRHKAEVALRQSEERFAKAFRLTPVPILICSADEQRLIDVNQAFLDTLAYESDDVLGKTVAQLDFIDE PAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSADTVNIQDAVCYLLVLMDITERKRTELELVAAIEEVMKDASWF SRTLIEKLANVKKVNSPQLPSVSFTDLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVW ARERGLFSGGGRGQR
Specific function: Positively Regulates The Transcription Of The Maltose Regulon Whose Gene Products Are Responsible For Uptake And Catabolism Of Malto-Oligosaccharides. Binds And Recognizes A DNA Motif (Called The Malt Box): 5'-Gga[Tg]Ga-3'. [C]
COG id: COG2202
COG function: function code T; FOG: PAS/PAC domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55834; Mature: 55703
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRDVLTTETNRRQLQQIIAGLSDGVILLELDQTILWANEAALAMHGVSRIGELGNNAGE CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHCCCHHH YVERFNLRYRNNHTLTPEQYPISRVATGETFSDVLVEVSPRSDEERTWVHSVRSMVLTDR HHHHHCCEECCCCCCCCCCCCCCCEECCCCHHHHEEEECCCCCHHHHHHHHHHHHHEECC DGDIESLVLIMSDVTDWANAEQRFEKTFNANPAPAVICRLSDLRYIKVNPGFLEMTGYTR CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCEEEECCCCH DQVIGASTYELDILEQAERKDLAIQRLRDVATIPQMQAELRLPDGGSKQVIVAGQPLVLN HHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCEEEEECCCEEEC DEDCMLFSFVDMELRHKAEVALRQSEERFAKAFRLTPVPILICSADEQRLIDVNQAFLDT CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH LAYESDDVLGKTVAQLDFIDEPAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSAD HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC TVNIQDAVCYLLVLMDITERKRTELELVAAIEEVMKDASWFSRTLIEKLANVKKVNSPQL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PSVSFTDLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIV CCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEE WARERGLFSGGGRGQR EEECCCCCCCCCCCCC >Mature Secondary Structure SRDVLTTETNRRQLQQIIAGLSDGVILLELDQTILWANEAALAMHGVSRIGELGNNAGE CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHHHHHCCCHHH YVERFNLRYRNNHTLTPEQYPISRVATGETFSDVLVEVSPRSDEERTWVHSVRSMVLTDR HHHHHCCEECCCCCCCCCCCCCCCEECCCCHHHHEEEECCCCCHHHHHHHHHHHHHEECC DGDIESLVLIMSDVTDWANAEQRFEKTFNANPAPAVICRLSDLRYIKVNPGFLEMTGYTR CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCEEEEECCCEEEECCCCH DQVIGASTYELDILEQAERKDLAIQRLRDVATIPQMQAELRLPDGGSKQVIVAGQPLVLN HHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCEEEEECCCEEEC DEDCMLFSFVDMELRHKAEVALRQSEERFAKAFRLTPVPILICSADEQRLIDVNQAFLDT CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH LAYESDDVLGKTVAQLDFIDEPAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSAD HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC TVNIQDAVCYLLVLMDITERKRTELELVAAIEEVMKDASWFSRTLIEKLANVKKVNSPQL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PSVSFTDLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIV CCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEE WARERGLFSGGGRGQR EEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA