| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yebQ [H]
Identifier: 77459603
GI number: 77459603
Start: 3855112
End: 3856512
Strand: Reverse
Name: yebQ [H]
Synonym: Pfl01_3381
Alternate gene names: 77459603
Gene position: 3856512-3855112 (Counterclockwise)
Preceding gene: 77459605
Following gene: 77459598
Centisome position: 59.9
GC content: 64.03
Gene sequence:
>1401_bases ATGCACCGAGAACCCCTGAGCCCTTCAGCCCGCTGGGCGCTGATCAGTCTGGCGCTGTCGATGCTCATGCCATCGCTCGA TACCAGCATCGCCAACGCCGGATTGCCCACGCTGGCGGCGGCGTTCGATGCGACGTTTCAACAGGTGCAATGGATCGTGC TGGCCTACCTGCTGGCGGTCACTACCTTGATTGTCAGCGTCGGGCGGTTGGGTGACGGCTTCGGTCGGCGGCGCTTGTTG TTGATCGGCATCGGCATTTTTACCGCCGCTTCGCTGGTCTGCGCACTGGCGCCGAGCCTCGCCTGGCTGATCGGTGCGCG GGCGGTGCAAGGGCTTGGCGCGGCAATCATGTTTGCGCTGACGGTGGCGCTGGTGGCCGATGCGGTGCCCAAATCCCGGG CCGGCAGTGCGATGGGGTTGCTGGCCACGATGTCGGCCACCGGCACCACCCTCGGGCCGTCGCTCGGTGGGCTGTTGATG GCGCATGTCGGCTGGCAGTCGGTTTTTGTGATCAACGTGCCGTTGGGATTGCTCAATGCGTGGCTGGTGTATCGCTATCT GCCGAAGGATCGTAGCGTGCGCTCGGGTGTTGCATTTGATTATCCCGGCACCGCCGTATTGATGCTGACGCTGGCGGCCT ATGCACTGGCGATGACGGTTGATGGATTCACCCCGACGTTGCTGTTGCTCAGCCTGTTGGGCGTGGGGTTGTTCATCCTG GTCGAGAAACGGAGCAAGGCGCCGCTGATTCACCTCTCTTTGTTCACCGACACGCGAATCAGCAGCAGTCTGGCGCTGAC CTTGCTGGTCACGACGGTGATGATGACCACGCTGGTGGTCGGGCCGTTTTACCTGAGTCGAGGTTTGGGTCTTTCCAGCA CTCAGGTCGGTCTGGCGTTGTCGATCGGGCCGTTGCTGGCGGCATTCAGCGGCGTGCCGGCCGGGCGGCTGGTGGATCGT TTCGGCGCGCGGCGGATGGTGCCGGGTGCGTTGTTCGGCCTGGCTTGCGGGTGTGGTCTCTTGGCGCTGTTTCCGGTGAG TTTCGGAGTGCTTGCATACGTGCTGCCGATCACGGTGGTGGCCTTGAGTTACGCGCTGTTCCAGGCCGCCAACAACAGCG GGTTGATGTCCGGCGTTGCTCAGGATCAGCGCGGTGTGGTCTCGGCCATGCTCGGGCTGTCGCGCAATCTGGGCTTGATC ACCGGGGCGGCGGCGATGGGCGCGGTGTTTGCACTGGCGACGGACGATCCGACTGAGGCGCCGGCCGCGGTCATCGCAGG CGGCTTGCACATGACCTTCGGTGTGGCTACGGCGTTGATGTTCGCGGCGTCTGCGCTCGGCGCCTTCACGCACCTGCGTC TCGCGTCTCCCGTGCCGGAAAGAACAGTTCAAAGCAGGTGA
Upstream 100 bases:
>100_bases ATGGCGTTCCATGCAGGTATCAAGTGCAAAGCATGCGTCTTGCGCCTTGTATTGTCGAGGCTCAGGCTATGTCGCATGAC CTTTGCCCTGTGAGCCCCCC
Downstream 100 bases:
>100_bases TGCCATCAGCGCTGCTGACGCTGTAACGGCCCTGATGCAACTGCATGATGGTCGCGACAATCGACAGGCCCAAGCCGTTG GACTGGGCCGAGCGCTCGCG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MHREPLSPSARWALISLALSMLMPSLDTSIANAGLPTLAAAFDATFQQVQWIVLAYLLAVTTLIVSVGRLGDGFGRRRLL LIGIGIFTAASLVCALAPSLAWLIGARAVQGLGAAIMFALTVALVADAVPKSRAGSAMGLLATMSATGTTLGPSLGGLLM AHVGWQSVFVINVPLGLLNAWLVYRYLPKDRSVRSGVAFDYPGTAVLMLTLAAYALAMTVDGFTPTLLLLSLLGVGLFIL VEKRSKAPLIHLSLFTDTRISSSLALTLLVTTVMMTTLVVGPFYLSRGLGLSSTQVGLALSIGPLLAAFSGVPAGRLVDR FGARRMVPGALFGLACGCGLLALFPVSFGVLAYVLPITVVALSYALFQAANNSGLMSGVAQDQRGVVSAMLGLSRNLGLI TGAAAMGAVFALATDDPTEAPAAVIAGGLHMTFGVATALMFAASALGAFTHLRLASPVPERTVQSR
Sequences:
>Translated_466_residues MHREPLSPSARWALISLALSMLMPSLDTSIANAGLPTLAAAFDATFQQVQWIVLAYLLAVTTLIVSVGRLGDGFGRRRLL LIGIGIFTAASLVCALAPSLAWLIGARAVQGLGAAIMFALTVALVADAVPKSRAGSAMGLLATMSATGTTLGPSLGGLLM AHVGWQSVFVINVPLGLLNAWLVYRYLPKDRSVRSGVAFDYPGTAVLMLTLAAYALAMTVDGFTPTLLLLSLLGVGLFIL VEKRSKAPLIHLSLFTDTRISSSLALTLLVTTVMMTTLVVGPFYLSRGLGLSSTQVGLALSIGPLLAAFSGVPAGRLVDR FGARRMVPGALFGLACGCGLLALFPVSFGVLAYVLPITVVALSYALFQAANNSGLMSGVAQDQRGVVSAMLGLSRNLGLI TGAAAMGAVFALATDDPTEAPAAVIAGGLHMTFGVATALMFAASALGAFTHLRLASPVPERTVQSR >Mature_466_residues MHREPLSPSARWALISLALSMLMPSLDTSIANAGLPTLAAAFDATFQQVQWIVLAYLLAVTTLIVSVGRLGDGFGRRRLL LIGIGIFTAASLVCALAPSLAWLIGARAVQGLGAAIMFALTVALVADAVPKSRAGSAMGLLATMSATGTTLGPSLGGLLM AHVGWQSVFVINVPLGLLNAWLVYRYLPKDRSVRSGVAFDYPGTAVLMLTLAAYALAMTVDGFTPTLLLLSLLGVGLFIL VEKRSKAPLIHLSLFTDTRISSSLALTLLVTTVMMTTLVVGPFYLSRGLGLSSTQVGLALSIGPLLAAFSGVPAGRLVDR FGARRMVPGALFGLACGCGLLALFPVSFGVLAYVLPITVVALSYALFQAANNSGLMSGVAQDQRGVVSAMLGLSRNLGLI TGAAAMGAVFALATDDPTEAPAAVIAGGLHMTFGVATALMFAASALGAFTHLRLASPVPERTVQSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=418, Percent_Identity=31.8181818181818, Blast_Score=173, Evalue=2e-44, Organism=Escherichia coli, GI1790195, Length=439, Percent_Identity=25.9681093394077, Blast_Score=116, Evalue=4e-27, Organism=Escherichia coli, GI1788392, Length=345, Percent_Identity=29.8550724637681, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1789042, Length=372, Percent_Identity=23.6559139784946, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1788710, Length=332, Percent_Identity=27.710843373494, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1790146, Length=161, Percent_Identity=29.8136645962733, Blast_Score=73, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6319770, Length=299, Percent_Identity=26.4214046822742, Blast_Score=84, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6323735, Length=301, Percent_Identity=27.5747508305648, Blast_Score=74, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6321663, Length=150, Percent_Identity=29.3333333333333, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322958, Length=175, Percent_Identity=29.7142857142857, Blast_Score=71, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6325455, Length=131, Percent_Identity=30.5343511450382, Blast_Score=70, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6324264, Length=165, Percent_Identity=29.0909090909091, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 48070; Mature: 48070
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHREPLSPSARWALISLALSMLMPSLDTSIANAGLPTLAAAFDATFQQVQWIVLAYLLAV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH TTLIVSVGRLGDGFGRRRLLLIGIGIFTAASLVCALAPSLAWLIGARAVQGLGAAIMFAL HHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVALVADAVPKSRAGSAMGLLATMSATGTTLGPSLGGLLMAHVGWQSVFVINVPLGLLNA HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHH WLVYRYLPKDRSVRSGVAFDYPGTAVLMLTLAAYALAMTVDGFTPTLLLLSLLGVGLFIL HHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEE VEKRSKAPLIHLSLFTDTRISSSLALTLLVTTVMMTTLVVGPFYLSRGLGLSSTQVGLAL EECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH SIGPLLAAFSGVPAGRLVDRFGARRMVPGALFGLACGCGLLALFPVSFGVLAYVLPITVV HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSYALFQAANNSGLMSGVAQDQRGVVSAMLGLSRNLGLITGAAAMGAVFALATDDPTEA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHEEEEECCCCCCC PAAVIAGGLHMTFGVATALMFAASALGAFTHLRLASPVPERTVQSR CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC >Mature Secondary Structure MHREPLSPSARWALISLALSMLMPSLDTSIANAGLPTLAAAFDATFQQVQWIVLAYLLAV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH TTLIVSVGRLGDGFGRRRLLLIGIGIFTAASLVCALAPSLAWLIGARAVQGLGAAIMFAL HHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVALVADAVPKSRAGSAMGLLATMSATGTTLGPSLGGLLMAHVGWQSVFVINVPLGLLNA HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHH WLVYRYLPKDRSVRSGVAFDYPGTAVLMLTLAAYALAMTVDGFTPTLLLLSLLGVGLFIL HHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEE VEKRSKAPLIHLSLFTDTRISSSLALTLLVTTVMMTTLVVGPFYLSRGLGLSSTQVGLAL EECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH SIGPLLAAFSGVPAGRLVDRFGARRMVPGALFGLACGCGLLALFPVSFGVLAYVLPITVV HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSYALFQAANNSGLMSGVAQDQRGVVSAMLGLSRNLGLITGAAAMGAVFALATDDPTEA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHEEEEECCCCCCC PAAVIAGGLHMTFGVATALMFAASALGAFTHLRLASPVPERTVQSR CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]