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The map label for this gene is yeaM [H]

Identifier: 77459478

GI number: 77459478

Start: 3736849

End: 3737637

Strand: Direct

Name: yeaM [H]

Synonym: Pfl01_3256

Alternate gene names: 77459478

Gene position: 3736849-3737637 (Clockwise)

Preceding gene: 77459476

Following gene: 77459479

Centisome position: 58.04

GC content: 62.86

Gene sequence:

>789_bases
ATGCCGCCAAAAGGACACGACAAGAGCGTCAGACGCAGCATTCCCGGGCTGCCCAGCCTGCCGCGTCCACTGTACGGGCG
CACCGAATCGCTGCCCAATCGTGCGCTCACCCGCCGCCACAGTCATCCGTGGGTGCAGTTGTCCTATGCGATCCAGGGCG
TGCTCGAAGTGCAGACTGCCGTCGGTCGTTTCGTTGCCCCACCGGAGCGTGCGGTGTGGATTCCGGCGGGCGTGCCACAT
CGGGTGTTCAGTTCACCGCACACGGAAATGCGCAGTCTGTACATCGATTGCAGTGTTGCCGACTGGGCGCCGGAGCGTTG
CCATGTGCTCGGCGTCAGCGATCTTTTGCGTGAGCTGATTCGAGCGTTCAGTCAGATTCCTGTCGAATATGACCAGAGCG
GCCCGCACGGGCGCCTGGCCCAGGTGATCCTCGATCAACTGGCCGATGCCCCGCCCATCGACCTGATGCTGCCATTGCCG
CAGGACAGTCGCCTGCGCCAGATATACCAGAGTCTGGAGCAACATCCGGAACAGCAGACCACCCTGGCGCACTGGAGCGA
AAAATTCGGCGTGACCGAGAAAACGCTGACTCGGCTGTTCCTGCGCGACACCGGCTTGACCTTCCGCACCTGGCGTCAGC
GCCTGCGTCTGTTGGGTGCGCTGACGCCGCTGGAGCGGGGCGAACGCGTCACCGACGTGGCTTTGGCGTGTGGTTATGAC
TCGACGTCGGCCTTTATCGCGGCGTTTCGCCAACAGTTTGGTGAGACGCCGGGAGAGTTTTTCCGATGA

Upstream 100 bases:

>100_bases
TCGTGGGCGCGTCATGGTTTGCTCATCCGGGGGGTTGCCAGTACGTTGAAGCGACTCTAACGTGACTGAAAATTACCGAC
TAACGCCGAAGAACCCACAG

Downstream 100 bases:

>100_bases
AATTAACCGATATTTATCGACTTTGTGCATGCCAATGGGCCAATTTCAGGGTAGAGTTTCGCCCATCAAGAATCTTTGAC
ATCTTTCGACGATAACAATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MPPKGHDKSVRRSIPGLPSLPRPLYGRTESLPNRALTRRHSHPWVQLSYAIQGVLEVQTAVGRFVAPPERAVWIPAGVPH
RVFSSPHTEMRSLYIDCSVADWAPERCHVLGVSDLLRELIRAFSQIPVEYDQSGPHGRLAQVILDQLADAPPIDLMLPLP
QDSRLRQIYQSLEQHPEQQTTLAHWSEKFGVTEKTLTRLFLRDTGLTFRTWRQRLRLLGALTPLERGERVTDVALACGYD
STSAFIAAFRQQFGETPGEFFR

Sequences:

>Translated_262_residues
MPPKGHDKSVRRSIPGLPSLPRPLYGRTESLPNRALTRRHSHPWVQLSYAIQGVLEVQTAVGRFVAPPERAVWIPAGVPH
RVFSSPHTEMRSLYIDCSVADWAPERCHVLGVSDLLRELIRAFSQIPVEYDQSGPHGRLAQVILDQLADAPPIDLMLPLP
QDSRLRQIYQSLEQHPEQQTTLAHWSEKFGVTEKTLTRLFLRDTGLTFRTWRQRLRLLGALTPLERGERVTDVALACGYD
STSAFIAAFRQQFGETPGEFFR
>Mature_261_residues
PPKGHDKSVRRSIPGLPSLPRPLYGRTESLPNRALTRRHSHPWVQLSYAIQGVLEVQTAVGRFVAPPERAVWIPAGVPHR
VFSSPHTEMRSLYIDCSVADWAPERCHVLGVSDLLRELIRAFSQIPVEYDQSGPHGRLAQVILDQLADAPPIDLMLPLPQ
DSRLRQIYQSLEQHPEQQTTLAHWSEKFGVTEKTLTRLFLRDTGLTFRTWRQRLRLLGALTPLERGERVTDVALACGYDS
TSAFIAAFRQQFGETPGEFFR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=35.1351351351351, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29703; Mature: 29572

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPKGHDKSVRRSIPGLPSLPRPLYGRTESLPNRALTRRHSHPWVQLSYAIQGVLEVQTA
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHH
VGRFVAPPERAVWIPAGVPHRVFSSPHTEMRSLYIDCSVADWAPERCHVLGVSDLLRELI
HHHHCCCCCCEEEECCCCCHHHHCCCCHHHHHEEEECCCCCCCCCHHEEECHHHHHHHHH
RAFSQIPVEYDQSGPHGRLAQVILDQLADAPPIDLMLPLPQDSRLRQIYQSLEQHPEQQT
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHH
TLAHWSEKFGVTEKTLTRLFLRDTGLTFRTWRQRLRLLGALTPLERGERVTDVALACGYD
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCC
STSAFIAAFRQQFGETPGEFFR
CHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure 
PPKGHDKSVRRSIPGLPSLPRPLYGRTESLPNRALTRRHSHPWVQLSYAIQGVLEVQTA
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHH
VGRFVAPPERAVWIPAGVPHRVFSSPHTEMRSLYIDCSVADWAPERCHVLGVSDLLRELI
HHHHCCCCCCEEEECCCCCHHHHCCCCHHHHHEEEECCCCCCCCCHHEEECHHHHHHHHH
RAFSQIPVEYDQSGPHGRLAQVILDQLADAPPIDLMLPLPQDSRLRQIYQSLEQHPEQQT
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHH
TLAHWSEKFGVTEKTLTRLFLRDTGLTFRTWRQRLRLLGALTPLERGERVTDVALACGYD
HHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCC
STSAFIAAFRQQFGETPGEFFR
CHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]