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The map label for this gene is fecI [C]

Identifier: 77459420

GI number: 77459420

Start: 3675082

End: 3675633

Strand: Reverse

Name: fecI [C]

Synonym: Pfl01_3198

Alternate gene names: 77459420

Gene position: 3675633-3675082 (Counterclockwise)

Preceding gene: 77459421

Following gene: 77459419

Centisome position: 57.09

GC content: 64.13

Gene sequence:

>552_bases
ATGAAAGACGCCGGACAAAGTTCGATGGTCCAGCTGTTCCTGACGTCCTACGAGGACTTTCGGGTGCGCCTGCGACGCCG
TCTCGGCTCGGAGGACCTGGCCAACGACGTGCTGCACGAAACCTACCTGCGGGTCGACCGCATGGAAGCGCCGCCGAACC
TGCTGCGGCCCAACGCCTACCTCTATCGCATGGCCCTGAACATCGCCGCCGACCGCCGCCAGGCCGATGCGCGGCTGCTC
ACCGGCAGCGAAGTCGAAGAACTGCTGCAAGTCAGCGACGAAGCGCTGGACCCGATGCGCGTCGTGGGCGGCCAGAAGGA
AATCCAGTCCCTGCTGAGCGCCCTCTACGAACTGCCGGCCCGGCGCCGCCGGATCTTCATCGCCGCACGCCTGGAAGAAG
CGCCGCACCTGGAAATCTCCCAGCGTTTCGGCATCTCCACGCGCATGGTCGAGAAGGAAATCAAGGCTGCCCTCGGACAC
TGCGCGGCCAAACTGGAAAGAAAAGTGTTTCAGCGGTTCGGTCGCGGGGCCGGAAAACCGTCTAGTGAATGA

Upstream 100 bases:

>100_bases
CGACACCCGGCGCATTGCGCCAGCCAGTCACGTTGCTGTTGTTACCCGAATCGTCAGGAAAGCGCATGGAATGCACACAA
TGGGAAGGAGTTTCCGGGGG

Downstream 100 bases:

>100_bases
AGCTCCCGATCAACCCGTCGAGTACCTGCGCGTTTGAACATCTTCCGTCTGACACCTGCCGAGCCCACGCCTGCCGAGCG
TCTGCAAAGCGAAGCCCGCG

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor FecI; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF-Subfamily Sigma-70 Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKDAGQSSMVQLFLTSYEDFRVRLRRRLGSEDLANDVLHETYLRVDRMEAPPNLLRPNAYLYRMALNIAADRRQADARLL
TGSEVEELLQVSDEALDPMRVVGGQKEIQSLLSALYELPARRRRIFIAARLEEAPHLEISQRFGISTRMVEKEIKAALGH
CAAKLERKVFQRFGRGAGKPSSE

Sequences:

>Translated_183_residues
MKDAGQSSMVQLFLTSYEDFRVRLRRRLGSEDLANDVLHETYLRVDRMEAPPNLLRPNAYLYRMALNIAADRRQADARLL
TGSEVEELLQVSDEALDPMRVVGGQKEIQSLLSALYELPARRRRIFIAARLEEAPHLEISQRFGISTRMVEKEIKAALGH
CAAKLERKVFQRFGRGAGKPSSE
>Mature_183_residues
MKDAGQSSMVQLFLTSYEDFRVRLRRRLGSEDLANDVLHETYLRVDRMEAPPNLLRPNAYLYRMALNIAADRRQADARLL
TGSEVEELLQVSDEALDPMRVVGGQKEIQSLLSALYELPARRRRIFIAARLEEAPHLEISQRFGISTRMVEKEIKAALGH
CAAKLERKVFQRFGRGAGKPSSE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20841; Mature: 20841

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAGQSSMVQLFLTSYEDFRVRLRRRLGSEDLANDVLHETYLRVDRMEAPPNLLRPNAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
LYRMALNIAADRRQADARLLTGSEVEELLQVSDEALDPMRVVGGQKEIQSLLSALYELPA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCH
RRRRIFIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCAAKLERKVFQRFGRGAGKP
HHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSE
CCC
>Mature Secondary Structure
MKDAGQSSMVQLFLTSYEDFRVRLRRRLGSEDLANDVLHETYLRVDRMEAPPNLLRPNAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
LYRMALNIAADRRQADARLLTGSEVEELLQVSDEALDPMRVVGGQKEIQSLLSALYELPA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCH
RRRRIFIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCAAKLERKVFQRFGRGAGKP
HHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA