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The map label for this gene is ykgD [C]

Identifier: 77459212

GI number: 77459212

Start: 3432641

End: 3433603

Strand: Direct

Name: ykgD [C]

Synonym: Pfl01_2990

Alternate gene names: 77459212

Gene position: 3432641-3433603 (Clockwise)

Preceding gene: 77459211

Following gene: 77459213

Centisome position: 53.32

GC content: 44.24

Gene sequence:

>963_bases
ATGCGTTCCAAATCCATACAATTCATCACCTATCCGGAATTAAGTTTGCTTGATTTGGCGGGCCCCCTCGAAGTGTTCAT
GACAGCTAACCGATTTTCCCGCTTTGATCATAAACCATATACAATTTCTATTTTAGCGTTAAACCAGACCACTGAGCCAT
GCTCCAATTTTTCAATACATACTGAAACTCTGCGAGCAGAAACCCCTTCTCCGCACACCTTAATCATACCCGGCGGACCC
GGTATACATAATTTCTACAAAGACCCGAAGTTCACCACACATTTTATACATCATGCAGACAAAGCCAAGCGCTTGATTTC
TGTTTGCACTGGCATATTCGCGCTAGCTTATGCTGGAAAACTGGACGGAAGAAAAGCAACCACTCACTGGTCCGCGTACG
ACGATTTGGAGAGAAGCTTTCCTTCAATAATAGTTAAGCGCGGCCCTATATTTATTAATGATGAACACATATGGACGTCT
GCAGGCGTCACATCAGGTATTGACTTAGCGTTAGCTATCGTTGAGGAGGATCTAGGATACACCGTTGCACTAGAGGTTGC
TCGACATCTGGTAATGTTTCTCAAACGCCCGGGCGATCAGAATCAATTCAGCTCTGCTTTGAATTTGCAATCGAAGAGTA
GCCAGTTCTCAGACTTGCATGCATGGATTAATGAAAATCTAGGCACCGACTTAACAGTGCCCGCGCTCGCAAACTTCATG
AACATGAGCGAAAGAACATTTATACGTAAGTACTCAGAATCCATGAGTAGAACGCCAAGCAAAACGGTAGAGCTCCTCCG
ATTAGACGCTGCTCGCGATATGCTTACAACCTCAAAAAAACCTCTAAAGACTATAGCCAAGCACTGCGGACTGGGTAGTG
AATCGACACTAATTAGAAGATTTTTGAAAAAATTTGGCACCACACCAAAAGAGTATCGCGCGCGCTTCAAATCGAACCAA
TAA

Upstream 100 bases:

>100_bases
TGTATTAGCTATGTATTGCGGGGGACCGCTCGATGACTCAAAATTGCTTTGTGAGGCGCCAGATGTAGGAATCCAGGCTT
TTTCTCATGGAGTACCTTTG

Downstream 100 bases:

>100_bases
CATTTTCACCACTCACAACGTAGCGATATTTATTCCTCAAAATAGCAGTACCTTTCCACATAATTATAGTGATCTCACCT
ATCGATGGCGCCCCCCCTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRSKSIQFITYPELSLLDLAGPLEVFMTANRFSRFDHKPYTISILALNQTTEPCSNFSIHTETLRAETPSPHTLIIPGGP
GIHNFYKDPKFTTHFIHHADKAKRLISVCTGIFALAYAGKLDGRKATTHWSAYDDLERSFPSIIVKRGPIFINDEHIWTS
AGVTSGIDLALAIVEEDLGYTVALEVARHLVMFLKRPGDQNQFSSALNLQSKSSQFSDLHAWINENLGTDLTVPALANFM
NMSERTFIRKYSESMSRTPSKTVELLRLDAARDMLTTSKKPLKTIAKHCGLGSESTLIRRFLKKFGTTPKEYRARFKSNQ

Sequences:

>Translated_320_residues
MRSKSIQFITYPELSLLDLAGPLEVFMTANRFSRFDHKPYTISILALNQTTEPCSNFSIHTETLRAETPSPHTLIIPGGP
GIHNFYKDPKFTTHFIHHADKAKRLISVCTGIFALAYAGKLDGRKATTHWSAYDDLERSFPSIIVKRGPIFINDEHIWTS
AGVTSGIDLALAIVEEDLGYTVALEVARHLVMFLKRPGDQNQFSSALNLQSKSSQFSDLHAWINENLGTDLTVPALANFM
NMSERTFIRKYSESMSRTPSKTVELLRLDAARDMLTTSKKPLKTIAKHCGLGSESTLIRRFLKKFGTTPKEYRARFKSNQ
>Mature_320_residues
MRSKSIQFITYPELSLLDLAGPLEVFMTANRFSRFDHKPYTISILALNQTTEPCSNFSIHTETLRAETPSPHTLIIPGGP
GIHNFYKDPKFTTHFIHHADKAKRLISVCTGIFALAYAGKLDGRKATTHWSAYDDLERSFPSIIVKRGPIFINDEHIWTS
AGVTSGIDLALAIVEEDLGYTVALEVARHLVMFLKRPGDQNQFSSALNLQSKSSQFSDLHAWINENLGTDLTVPALANFM
NMSERTFIRKYSESMSRTPSKTVELLRLDAARDMLTTSKKPLKTIAKHCGLGSESTLIRRFLKKFGTTPKEYRARFKSNQ

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C56 family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 36014; Mature: 36014

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKSIQFITYPELSLLDLAGPLEVFMTANRFSRFDHKPYTISILALNQTTEPCSNFSIH
CCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEE
TETLRAETPSPHTLIIPGGPGIHNFYKDPKFTTHFIHHADKAKRLISVCTGIFALAYAGK
HHHHCCCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDGRKATTHWSAYDDLERSFPSIIVKRGPIFINDEHIWTSAGVTSGIDLALAIVEEDLGY
CCCCCCCCCCHHHHHHHHHHHHHEEECCCEEECCCCEEECCCCCCCHHHHHEEHHHCCCH
TVALEVARHLVMFLKRPGDQNQFSSALNLQSKSSQFSDLHAWINENLGTDLTVPALANFM
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHH
NMSERTFIRKYSESMSRTPSKTVELLRLDAARDMLTTSKKPLKTIAKHCGLGSESTLIRR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
FLKKFGTTPKEYRARFKSNQ
HHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRSKSIQFITYPELSLLDLAGPLEVFMTANRFSRFDHKPYTISILALNQTTEPCSNFSIH
CCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEE
TETLRAETPSPHTLIIPGGPGIHNFYKDPKFTTHFIHHADKAKRLISVCTGIFALAYAGK
HHHHCCCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDGRKATTHWSAYDDLERSFPSIIVKRGPIFINDEHIWTSAGVTSGIDLALAIVEEDLGY
CCCCCCCCCCHHHHHHHHHHHHHEEECCCEEECCCCEEECCCCCCCHHHHHEEHHHCCCH
TVALEVARHLVMFLKRPGDQNQFSSALNLQSKSSQFSDLHAWINENLGTDLTVPALANFM
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHH
NMSERTFIRKYSESMSRTPSKTVELLRLDAARDMLTTSKKPLKTIAKHCGLGSESTLIRR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
FLKKFGTTPKEYRARFKSNQ
HHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157602 [H]