Click here to switch to the map view.

The map label for this gene is rraA [C]

Identifier: 77459211

GI number: 77459211

Start: 3431147

End: 3431785

Strand: Direct

Name: rraA [C]

Synonym: Pfl01_2988

Alternate gene names: 77459211

Gene position: 3431147-3431785 (Clockwise)

Preceding gene: 77459210

Following gene: 77459212

Centisome position: 53.29

GC content: 54.77

Gene sequence:

>639_bases
ATGTTTATCAATGTATCTGATGAAAGCATCACTGTAAGCGAAGATTGGGAACGCGCGTCCCTTGAACACATTGAAGAGAT
ATCGCATTACCCGGTCGCACTGATCGGCGATGTATTGCAGCGCCTGGGAATGATGGCTTCCGCTATCCACCATGTGGCAG
GTAAAGCTTCTTTCTACGGTACGGTACTGCCTATCCTCACTTGGGAAGGTGACAATCTGGCCATCCACAGGGCATTGGAC
GATGCCAAGCCAGGTGATGTTCTAGTGATCAACGGCAACGGTGAAACCAACCGTGCGGTCTTTGGTGATCTGCTGGGTGA
GGTGTGTCTGATTCGCAACGTCGCAGCGGTGGTCATCGACGGCGCGGTTCGAGATGTGGAAGAGCTGAGCGCCATGGGGC
TGCCGACGTATGCGCGCGCCGTGAATCCAGCCGGCCCTTCCAAATATGGTCCCGGGCAAGTAGGCGCGCCCGTCGCTTGC
GGTAATGTGGTTTGTAACCCGGGCGACGCAATTTTGGGAGACAAAGACGGGATAATCGTTATCAGTCGCCACTTGGTTCC
ATCACTCGCCGGGAAGCTCAAAGTCCAGGACAGGATCGAGAACAGTTTCAGGGAAAAAGTCCGAGCGAGCATTCGCTGA

Upstream 100 bases:

>100_bases
TGCTGTCTTGCGCGGCGCCCCCCCGCTCCACCCAGTCAACAACCCCGTACCTAAAACATTTAACTAATAGCGCTCTAAAC
AGCTTCCCGCCGAGGCCATC

Downstream 100 bases:

>100_bases
GGATCGGTGAAGACATAAGGGAGGTCAAATTAAGCCTCCTTTATGCAACCCTCACACTCAAACCGACCGTCGCGACCGCA
TGCACGTAGCGGCTGGTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MFINVSDESITVSEDWERASLEHIEEISHYPVALIGDVLQRLGMMASAIHHVAGKASFYGTVLPILTWEGDNLAIHRALD
DAKPGDVLVINGNGETNRAVFGDLLGEVCLIRNVAAVVIDGAVRDVEELSAMGLPTYARAVNPAGPSKYGPGQVGAPVAC
GNVVCNPGDAILGDKDGIIVISRHLVPSLAGKLKVQDRIENSFREKVRASIR

Sequences:

>Translated_212_residues
MFINVSDESITVSEDWERASLEHIEEISHYPVALIGDVLQRLGMMASAIHHVAGKASFYGTVLPILTWEGDNLAIHRALD
DAKPGDVLVINGNGETNRAVFGDLLGEVCLIRNVAAVVIDGAVRDVEELSAMGLPTYARAVNPAGPSKYGPGQVGAPVAC
GNVVCNPGDAILGDKDGIIVISRHLVPSLAGKLKVQDRIENSFREKVRASIR
>Mature_212_residues
MFINVSDESITVSEDWERASLEHIEEISHYPVALIGDVLQRLGMMASAIHHVAGKASFYGTVLPILTWEGDNLAIHRALD
DAKPGDVLVINGNGETNRAVFGDLLGEVCLIRNVAAVVIDGAVRDVEELSAMGLPTYARAVNPAGPSKYGPGQVGAPVAC
GNVVCNPGDAILGDKDGIIVISRHLVPSLAGKLKVQDRIENSFREKVRASIR

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=153, Percent_Identity=28.7581699346405, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 22586; Mature: 22586

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFINVSDESITVSEDWERASLEHIEEISHYPVALIGDVLQRLGMMASAIHHVAGKASFYG
CEEECCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
TVLPILTWEGDNLAIHRALDDAKPGDVLVINGNGETNRAVFGDLLGEVCLIRNVAAVVID
EEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GAVRDVEELSAMGLPTYARAVNPAGPSKYGPGQVGAPVACGNVVCNPGDAILGDKDGIIV
HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEECCCEEECCCCCEECCCCCEEE
ISRHLVPSLAGKLKVQDRIENSFREKVRASIR
EEHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFINVSDESITVSEDWERASLEHIEEISHYPVALIGDVLQRLGMMASAIHHVAGKASFYG
CEEECCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
TVLPILTWEGDNLAIHRALDDAKPGDVLVINGNGETNRAVFGDLLGEVCLIRNVAAVVID
EEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GAVRDVEELSAMGLPTYARAVNPAGPSKYGPGQVGAPVACGNVVCNPGDAILGDKDGIIV
HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEECCCEEECCCCCEECCCCCEEE
ISRHLVPSLAGKLKVQDRIENSFREKVRASIR
EEHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]