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The map label for this gene is bfrD [H]

Identifier: 77459177

GI number: 77459177

Start: 3391795

End: 3392994

Strand: Direct

Name: bfrD [H]

Synonym: Pfl01_2952

Alternate gene names: 77459177

Gene position: 3391795-3392994 (Clockwise)

Preceding gene: 77459175

Following gene: 77459206

Centisome position: 52.68

GC content: 57.92

Gene sequence:

>1200_bases
TTGAGCGTGGCTGGTGAGATAGCGGCTACTCGCTTTGGTGCAGCGGCTTTTAAACGGGCAAACGCTGCAATCGGCGATGG
TCGCCAAAGGCACGATCAGGAGTTCAACGGTGACCGTATCGAGCCGACTCAGCAGGCTCAACTGTTCGGCCGGGCCAGCG
ATTGGGCCTTGGGCGTGGATTACAACACCAATCAGCAAACCAGCTACCCATTGTCCAAAGGCGCCTTCGACACTATCGAT
CCAGGTGGCTTCGAGCCGGGCCACTTCCTGGATATTCCAGGTATGGATCCGCCGCGCAGTAAAGGTCGCAGCACCTGGAC
TGATACCACGTCAGTTTTCCTCGAGAACCGTAGGCGTCTGACCGAGCGACTGGCGCTAATTACTGCGTTGCGCTATGACC
ATATCGACTTCGAGGTCGTCGATCATGCGGCGCAGGCCAGGCTCGACAAACGTTGGGATGCAGTCACGTGTCGCCTGGGT
CTGGTGTACGGCCTGACGTCGAATGTCAGCCTTTATAACCAATACAGTACGTCAGCCGAGCCGCCGGGAGGTACGCTTAC
CGGCGCCTCCGTTTCCCAAGTGGGTGACTTCGATTTGAGCACCGGCCGCCAAATCGAGGTGGGCAGCAAGTTCGATTTTC
TTGACGGTCGCGGCTCGGCCACTGCGGCGGCCTACCGCATCGTGCGCAAGAACATCTCCGTCCCCTCTTCTACGGTGCCC
AACACCACCGAACAAGCAGGTCAGCAGACTTCGACCGGCATCGAGATCGCGACTTCGTTCAAGATCACTCCCAAGCTATT
GGCCGCCGGTAACTTCAGCTGGGTCAGGGCCGAGTACGACGAATTCAATGAAAACATCGCAGGCGTCGTTTACTCGCGCA
AAGGCAAGAATCCGGCGAACATTTCAGACCGCGTAGCCAATCTCTGGTTGATCTATGACGTGGCTCCCGACTGGCAACTC
GGGGCCGACGCACGTTACGTGTCGTCGGTCTACGCCAATACGGCCAATACGACGTGGGTGCCCTCGAACACCGTCTATGG
TTTGCCCATGACTCACGACCTGGACAAACACATGCAGCTCAGCGCGCGTCTGCGTAACCTGAACGACGAGGTCTATGCTC
GTTTCATTCACCAGAGCAACCCCCAATATTACCTAGGGGAGCCGCGCAGCCTGGAAATCGCTGTGCAGTGGAGCTACTGA

Upstream 100 bases:

>100_bases
GCTTGAGATTGCCGAAGGAGTGTTCGACGATGGATCGCTGAAGGGCCATCATCTCGGGATGGGCCCGCATTCGTTGCTCC
ATTCGCTCAAAGGCGTCCTC

Downstream 100 bases:

>100_bases
AAAGAAAGAACCCGTTGCGTTATGGAGGGGCCCGCTGGACTGACATCCCAGCGCGCCTTTTCATGATTCAAGCAGCTGGT
CGTTCCCATTCGATAAGCTC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MSVAGEIAATRFGAAAFKRANAAIGDGRQRHDQEFNGDRIEPTQQAQLFGRASDWALGVDYNTNQQTSYPLSKGAFDTID
PGGFEPGHFLDIPGMDPPRSKGRSTWTDTTSVFLENRRRLTERLALITALRYDHIDFEVVDHAAQARLDKRWDAVTCRLG
LVYGLTSNVSLYNQYSTSAEPPGGTLTGASVSQVGDFDLSTGRQIEVGSKFDFLDGRGSATAAAYRIVRKNISVPSSTVP
NTTEQAGQQTSTGIEIATSFKITPKLLAAGNFSWVRAEYDEFNENIAGVVYSRKGKNPANISDRVANLWLIYDVAPDWQL
GADARYVSSVYANTANTTWVPSNTVYGLPMTHDLDKHMQLSARLRNLNDEVYARFIHQSNPQYYLGEPRSLEIAVQWSY

Sequences:

>Translated_399_residues
MSVAGEIAATRFGAAAFKRANAAIGDGRQRHDQEFNGDRIEPTQQAQLFGRASDWALGVDYNTNQQTSYPLSKGAFDTID
PGGFEPGHFLDIPGMDPPRSKGRSTWTDTTSVFLENRRRLTERLALITALRYDHIDFEVVDHAAQARLDKRWDAVTCRLG
LVYGLTSNVSLYNQYSTSAEPPGGTLTGASVSQVGDFDLSTGRQIEVGSKFDFLDGRGSATAAAYRIVRKNISVPSSTVP
NTTEQAGQQTSTGIEIATSFKITPKLLAAGNFSWVRAEYDEFNENIAGVVYSRKGKNPANISDRVANLWLIYDVAPDWQL
GADARYVSSVYANTANTTWVPSNTVYGLPMTHDLDKHMQLSARLRNLNDEVYARFIHQSNPQYYLGEPRSLEIAVQWSY
>Mature_398_residues
SVAGEIAATRFGAAAFKRANAAIGDGRQRHDQEFNGDRIEPTQQAQLFGRASDWALGVDYNTNQQTSYPLSKGAFDTIDP
GGFEPGHFLDIPGMDPPRSKGRSTWTDTTSVFLENRRRLTERLALITALRYDHIDFEVVDHAAQARLDKRWDAVTCRLGL
VYGLTSNVSLYNQYSTSAEPPGGTLTGASVSQVGDFDLSTGRQIEVGSKFDFLDGRGSATAAAYRIVRKNISVPSSTVPN
TTEQAGQQTSTGIEIATSFKITPKLLAAGNFSWVRAEYDEFNENIAGVVYSRKGKNPANISDRVANLWLIYDVAPDWQLG
ADARYVSSVYANTANTTWVPSNTVYGLPMTHDLDKHMQLSARLRNLNDEVYARFIHQSNPQYYLGEPRSLEIAVQWSY

Specific function: Probably involved in iron transport [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=384, Percent_Identity=23.6979166666667, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786344, Length=276, Percent_Identity=27.536231884058, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 44101; Mature: 43970

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAGEIAATRFGAAAFKRANAAIGDGRQRHDQEFNGDRIEPTQQAQLFGRASDWALGVD
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEC
YNTNQQTSYPLSKGAFDTIDPGGFEPGHFLDIPGMDPPRSKGRSTWTDTTSVFLENRRRL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
TERLALITALRYDHIDFEVVDHAAQARLDKRWDAVTCRLGLVYGLTSNVSLYNQYSTSAE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCCCC
PPGGTLTGASVSQVGDFDLSTGRQIEVGSKFDFLDGRGSATAAAYRIVRKNISVPSSTVP
CCCCEECCCCHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
NTTEQAGQQTSTGIEIATSFKITPKLLAAGNFSWVRAEYDEFNENIAGVVYSRKGKNPAN
CCHHHHCCCCCCCEEEEEEEEECHHHEECCCCEEEEECHHHHCCCEEEEEEECCCCCCCC
ISDRVANLWLIYDVAPDWQLGADARYVSSVYANTANTTWVPSNTVYGLPMTHDLDKHMQL
HHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEECCCCEEEECCCCCCHHHHHHH
SARLRNLNDEVYARFIHQSNPQYYLGEPRSLEIAVQWSY
HHHHHCCCHHHHHHHHHCCCCCEEECCCCEEEEEEEECC
>Mature Secondary Structure 
SVAGEIAATRFGAAAFKRANAAIGDGRQRHDQEFNGDRIEPTQQAQLFGRASDWALGVD
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEC
YNTNQQTSYPLSKGAFDTIDPGGFEPGHFLDIPGMDPPRSKGRSTWTDTTSVFLENRRRL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
TERLALITALRYDHIDFEVVDHAAQARLDKRWDAVTCRLGLVYGLTSNVSLYNQYSTSAE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCCCC
PPGGTLTGASVSQVGDFDLSTGRQIEVGSKFDFLDGRGSATAAAYRIVRKNISVPSSTVP
CCCCEECCCCHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
NTTEQAGQQTSTGIEIATSFKITPKLLAAGNFSWVRAEYDEFNENIAGVVYSRKGKNPAN
CCHHHHCCCCCCCEEEEEEEEECHHHEECCCCEEEEECHHHHCCCEEEEEEECCCCCCCC
ISDRVANLWLIYDVAPDWQLGADARYVSSVYANTANTTWVPSNTVYGLPMTHDLDKHMQL
HHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEECCCCEEEECCCCCCHHHHHHH
SARLRNLNDEVYARFIHQSNPQYYLGEPRSLEIAVQWSY
HHHHHCCCHHHHHHHHHCCCCCEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]