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The map label for this gene is rarD [C]

Identifier: 77459141

GI number: 77459141

Start: 3361284

End: 3362165

Strand: Direct

Name: rarD [C]

Synonym: Pfl01_2916

Alternate gene names: 77459141

Gene position: 3361284-3362165 (Clockwise)

Preceding gene: 77459140

Following gene: 77459144

Centisome position: 52.21

GC content: 58.84

Gene sequence:

>882_bases
TTGTCTAAAGGCATTGCTCTATCGGTGACAGCATCGACGCTGTTTGCCGTCATGTATTACTACACCTCGCTGCTCACCCC
TTTGAGCGGCGTGGAAATCTTCGGTTGGCGGATGCTGCTGACCGTGCCCTGCATGACCGTGTTCATGCTGGTTTCCGGCG
AATGGCGGCGGGTGCTGGAGCTGCTGCGCGGGCTCCCTGCACTGCCGAAGTTGATCGGTGGTCTGATCCTCTCGTCAGCG
TTGCTCGGCGTGCAGTTGTGGCTGTTCATGTGGGCGCCGCTCAACGGCTACAGCCTCGATGTGTCGCTGGGCTACTTCCT
GCTACCGTTGTCCATGGTCCTGACCGGACGCATCGCTTATGGCGAAAACCTGTCATACCTGCAAAAAGTCGCGGTGTTTT
TTGCCAGCCTCGGTGTGTTGAACGAGTTGTATCAGGTCGGCGGGTTTTCCTGGGCGACGCTGGTGGTGGTCGTCGGTTAC
CCGCTGTACTTCGTGCTGCGCAAATACCTCAAGACCGACAACCTCGGCGGTTTGTGGGTCGACATGACCCTGATGCTGCC
GGTGGCGTACTGGTTTGTGCGCGGCGGCGAACAGGGTTTCGGCGTGTTCGATCAGTACCCGGCGCTGACATGGCTGATTC
CGTTGCTCGGTCTGATCAGTGCATCGGCGCTGGTGGTGTACATCATTGCCAGTCGCCTTCTGCCGTTCAGTCTGTTCGGT
TTGTTGAGTTACGTAGAGCCAGTGTTGTTGCTCGGCGTGGCGCTGCTGCTGGGTGAGAGCATCAAGCCCGGAGAATGGCT
GACCTACATCCCGATCTGGCTCGCCGTGGTGGTGCTGGTGTTTGAAGGCTTCAAGCATCTGATGCGCCAACGGCGCCCGT
AA

Upstream 100 bases:

>100_bases
TTTTGGATCTGTTGAAAATAATGACCATCTGGCCAATATTCACCACAAAAACCACGTATCCTGCGCGCCCCGTTTCACCA
TCCCCCCCCGCGAGGACAGT

Downstream 100 bases:

>100_bases
GACGCGCAATAAAAAGCCCGGCCTGCATTTCTGCAGGCGGGCTTTTTTACATCTGGTGCGGATTACTCGGTAGCGAGTAC
GCCACGACGCACCTGGTCAC

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSKGIALSVTASTLFAVMYYYTSLLTPLSGVEIFGWRMLLTVPCMTVFMLVSGEWRRVLELLRGLPALPKLIGGLILSSA
LLGVQLWLFMWAPLNGYSLDVSLGYFLLPLSMVLTGRIAYGENLSYLQKVAVFFASLGVLNELYQVGGFSWATLVVVVGY
PLYFVLRKYLKTDNLGGLWVDMTLMLPVAYWFVRGGEQGFGVFDQYPALTWLIPLLGLISASALVVYIIASRLLPFSLFG
LLSYVEPVLLLGVALLLGESIKPGEWLTYIPIWLAVVVLVFEGFKHLMRQRRP

Sequences:

>Translated_293_residues
MSKGIALSVTASTLFAVMYYYTSLLTPLSGVEIFGWRMLLTVPCMTVFMLVSGEWRRVLELLRGLPALPKLIGGLILSSA
LLGVQLWLFMWAPLNGYSLDVSLGYFLLPLSMVLTGRIAYGENLSYLQKVAVFFASLGVLNELYQVGGFSWATLVVVVGY
PLYFVLRKYLKTDNLGGLWVDMTLMLPVAYWFVRGGEQGFGVFDQYPALTWLIPLLGLISASALVVYIIASRLLPFSLFG
LLSYVEPVLLLGVALLLGESIKPGEWLTYIPIWLAVVVLVFEGFKHLMRQRRP
>Mature_292_residues
SKGIALSVTASTLFAVMYYYTSLLTPLSGVEIFGWRMLLTVPCMTVFMLVSGEWRRVLELLRGLPALPKLIGGLILSSAL
LGVQLWLFMWAPLNGYSLDVSLGYFLLPLSMVLTGRIAYGENLSYLQKVAVFFASLGVLNELYQVGGFSWATLVVVVGYP
LYFVLRKYLKTDNLGGLWVDMTLMLPVAYWFVRGGEQGFGVFDQYPALTWLIPLLGLISASALVVYIIASRLLPFSLFGL
LSYVEPVLLLGVALLLGESIKPGEWLTYIPIWLAVVVLVFEGFKHLMRQRRP

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=26.962457337884, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32641; Mature: 32510

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGIALSVTASTLFAVMYYYTSLLTPLSGVEIFGWRMLLTVPCMTVFMLVSGEWRRVLE
CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLRGLPALPKLIGGLILSSALLGVQLWLFMWAPLNGYSLDVSLGYFLLPLSMVLTGRIAY
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHC
GENLSYLQKVAVFFASLGVLNELYQVGGFSWATLVVVVGYPLYFVLRKYLKTDNLGGLWV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
DMTLMLPVAYWFVRGGEQGFGVFDQYPALTWLIPLLGLISASALVVYIIASRLLPFSLFG
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSYVEPVLLLGVALLLGESIKPGEWLTYIPIWLAVVVLVFEGFKHLMRQRRP
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKGIALSVTASTLFAVMYYYTSLLTPLSGVEIFGWRMLLTVPCMTVFMLVSGEWRRVLE
CCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLRGLPALPKLIGGLILSSALLGVQLWLFMWAPLNGYSLDVSLGYFLLPLSMVLTGRIAY
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHC
GENLSYLQKVAVFFASLGVLNELYQVGGFSWATLVVVVGYPLYFVLRKYLKTDNLGGLWV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
DMTLMLPVAYWFVRGGEQGFGVFDQYPALTWLIPLLGLISASALVVYIIASRLLPFSLFG
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSYVEPVLLLGVALLLGESIKPGEWLTYIPIWLAVVVLVFEGFKHLMRQRRP
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]