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The map label for this gene is yvbU [H]

Identifier: 77459144

GI number: 77459144

Start: 3364576

End: 3365448

Strand: Direct

Name: yvbU [H]

Synonym: Pfl01_2919

Alternate gene names: 77459144

Gene position: 3364576-3365448 (Clockwise)

Preceding gene: 77459141

Following gene: 77459145

Centisome position: 52.26

GC content: 62.08

Gene sequence:

>873_bases
ATGACCCTGACCCAACTCGAAATCTTCTCGCTGGTGGCCGAACTGCGAGGTTTTACTCTCGCCGCCCATCGCCTCGGGAT
TTCCCAGTCAGCGGTGTCCCACGCCTTGAAGTCGCTGGAACAGGAACTGGGCGTCGAACTGCTGCGCCGGCACCAATCGC
AAGTGGAACTGAGCGACATCGGCGAGCAATTGCTGCTGCGGGCCCGGGCGATGCTTGGGCTGGCCAATACCCTGCGCCAA
GAGGCGGCGGATGCGCGCGGCATGAAGCGCGGCACATTGCGCATCGGTTCGTTCGGGCCGACATCGTCGATCAAGTTGTT
GCCCAGGATTCTGCAGCAGTATCGCGAGGCGCATCCGGGGATCGAAGTGCACATCGATGAAGGCCCGGATCGGCAGGTCA
TCCAGTGGCTGGAGGAGCGACGGATCGACATCGGCTTTGTGGTGCTGCCCGAGGAACGCTTCGACACGTTTGCCTTGATC
GAAGATCAGATGGTCGCCCTGCTCCCGCTCGGTCACCCGTTGGCGGCGCACGAATCAGTGACGCTGAAAGACTTATGCAA
CGATCCGTTCGTGCTGACCGAGGCCGGTTCGTCGGAGCTGGTATCGCGCCTGTTCAACACGGCGCGGTTGAACCCGAACA
TCCGCTATCGCTGCTCGCAGCTGCTCAGCACGCTCGACACCGTGGGCCGGGGCGACGCAATGACTGTGGTGGCGGAAGGC
TCGTTGCCCTTCGATTCCGACCCGCGCTATGTAAAACGGACATTGTCACCGCCCGTCAAACGGCAGGTCGGACTGGCGGT
ACTGGATCAGCGCCAGGCATCGCCCGCCACGCTGGCATTCATTCAACTGGCAACACGGCTGGATTACCGTTGA

Upstream 100 bases:

>100_bases
CGGACAGGTTCATGACAACTCATAACGCTCCCCACGATGAGGCTGACGGATGACGTATCATTCGATTGATTCCTCATCAT
CGTAAAATGAGTCTTTACTC

Downstream 100 bases:

>100_bases
GCAGCGCAGGCGTCATTGGCCATCTATCATGGGCTCAGACCTCGGGCTTTGCGCGCACGCTTCGCCTGCCATCAAGAGCC
CCACTCCATCGCGACAGGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTLTQLEIFSLVAELRGFTLAAHRLGISQSAVSHALKSLEQELGVELLRRHQSQVELSDIGEQLLLRARAMLGLANTLRQ
EAADARGMKRGTLRIGSFGPTSSIKLLPRILQQYREAHPGIEVHIDEGPDRQVIQWLEERRIDIGFVVLPEERFDTFALI
EDQMVALLPLGHPLAAHESVTLKDLCNDPFVLTEAGSSELVSRLFNTARLNPNIRYRCSQLLSTLDTVGRGDAMTVVAEG
SLPFDSDPRYVKRTLSPPVKRQVGLAVLDQRQASPATLAFIQLATRLDYR

Sequences:

>Translated_290_residues
MTLTQLEIFSLVAELRGFTLAAHRLGISQSAVSHALKSLEQELGVELLRRHQSQVELSDIGEQLLLRARAMLGLANTLRQ
EAADARGMKRGTLRIGSFGPTSSIKLLPRILQQYREAHPGIEVHIDEGPDRQVIQWLEERRIDIGFVVLPEERFDTFALI
EDQMVALLPLGHPLAAHESVTLKDLCNDPFVLTEAGSSELVSRLFNTARLNPNIRYRCSQLLSTLDTVGRGDAMTVVAEG
SLPFDSDPRYVKRTLSPPVKRQVGLAVLDQRQASPATLAFIQLATRLDYR
>Mature_289_residues
TLTQLEIFSLVAELRGFTLAAHRLGISQSAVSHALKSLEQELGVELLRRHQSQVELSDIGEQLLLRARAMLGLANTLRQE
AADARGMKRGTLRIGSFGPTSSIKLLPRILQQYREAHPGIEVHIDEGPDRQVIQWLEERRIDIGFVVLPEERFDTFALIE
DQMVALLPLGHPLAAHESVTLKDLCNDPFVLTEAGSSELVSRLFNTARLNPNIRYRCSQLLSTLDTVGRGDAMTVVAEGS
LPFDSDPRYVKRTLSPPVKRQVGLAVLDQRQASPATLAFIQLATRLDYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=284, Percent_Identity=28.169014084507, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787879, Length=244, Percent_Identity=28.2786885245902, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=30.4526748971193, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=26.5993265993266, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788481, Length=201, Percent_Identity=32.8358208955224, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=290, Percent_Identity=26.551724137931, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786401, Length=145, Percent_Identity=33.7931034482759, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=23.7113402061856, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367136, Length=289, Percent_Identity=23.8754325259516, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787601, Length=245, Percent_Identity=24.8979591836735, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=174, Percent_Identity=27.0114942528736, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=263, Percent_Identity=23.9543726235741, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081904, Length=201, Percent_Identity=26.865671641791, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI48994962, Length=160, Percent_Identity=28.75, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=245, Percent_Identity=26.530612244898, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787589, Length=153, Percent_Identity=30.718954248366, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788706, Length=191, Percent_Identity=29.3193717277487, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787128, Length=125, Percent_Identity=32, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32278; Mature: 32146

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTQLEIFSLVAELRGFTLAAHRLGISQSAVSHALKSLEQELGVELLRRHQSQVELSDI
CCCHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GEQLLLRARAMLGLANTLRQEAADARGMKRGTLRIGSFGPTSSIKLLPRILQQYREAHPG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCC
IEVHIDEGPDRQVIQWLEERRIDIGFVVLPEERFDTFALIEDQMVALLPLGHPLAAHESV
EEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHEEECCCCCCCCCCC
TLKDLCNDPFVLTEAGSSELVSRLFNTARLNPNIRYRCSQLLSTLDTVGRGDAMTVVAEG
CHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
SLPFDSDPRYVKRTLSPPVKRQVGLAVLDQRQASPATLAFIQLATRLDYR
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TLTQLEIFSLVAELRGFTLAAHRLGISQSAVSHALKSLEQELGVELLRRHQSQVELSDI
CCHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GEQLLLRARAMLGLANTLRQEAADARGMKRGTLRIGSFGPTSSIKLLPRILQQYREAHPG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCC
IEVHIDEGPDRQVIQWLEERRIDIGFVVLPEERFDTFALIEDQMVALLPLGHPLAAHESV
EEEEECCCCCHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHEEECCCCCCCCCCC
TLKDLCNDPFVLTEAGSSELVSRLFNTARLNPNIRYRCSQLLSTLDTVGRGDAMTVVAEG
CHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
SLPFDSDPRYVKRTLSPPVKRQVGLAVLDQRQASPATLAFIQLATRLDYR
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]