| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yxxB [H]
Identifier: 77458948
GI number: 77458948
Start: 3139947
End: 3140747
Strand: Reverse
Name: yxxB [H]
Synonym: Pfl01_2723
Alternate gene names: 77458948
Gene position: 3140747-3139947 (Counterclockwise)
Preceding gene: 77458951
Following gene: 77458946
Centisome position: 48.78
GC content: 56.68
Gene sequence:
>801_bases ATGTCCGCGCAACGCAGTCTCGTCATACTCGCTCGGGGCGGATACGCCGCTCGCGGAGTGCTTTATTTGATCATCGGCAT ATTCGCGCTATTGGCAGCCCATGATTCGACAAAACCCAAGGACAGTCACAAGAGTCTGGAAGCCTTGCTGAGCCAGCCGT TCGGCTATTTTCTGGTGGGCCTTGTGGTGGCGGGTCTGCTTGCGTTTGCAGCCTGGCGTGTCCTGCAAGCGATACGCGAT GTCGATCATCACGGCACGCAGCTCAAAGGGCTGGTGATTCGTGCAGGCCTGTTTGCAGGAGGTCTGGTCAACGGTGCTCT GGCGTTTTTTGCATTGGGACTGCTTGTGAGCGGTAGCCGCCGTTCGAGCCATTCCGCAGAGCAGACCAAAGACTGGCTGG CGCATCTTTTGTCTTGGGAACACTCGAATCTATTGTTGTACCTGATTGCGCTCATTCCGCTGGGGGTTGGCGTTGCTCAC ATCATCAAGGGATGGAAGGCCTCGTTCGAGAAGTATTTTGAGGCCGACGAAGAGGTCATGCGCTATGTCCGTCCGGTGTC TCGCTTCGGTCTGATCGCACGCGGCGTCGTGTTTATGGAGATTGCTTTGCTGCTGGCCGTCAGCGGTTCCGCTTATCAAG CCATGGACCCGCCTGGCATGAAGGAAGCGCTGGACGCGCTGCAGAATCTGCCCGCCGGATGGCTTGTCCTGATGGTGATG GCCCTGGGGCTGATTGCCTTCTCGGTTTACAGTTTCTCGGAAGCGTGTTGGCGCAAGATCAATATGGATGTGCTTCAGTA A
Upstream 100 bases:
>100_bases ATCCATCGCACTCCGGGTAAACGTCCGGACTCCGATTTGTAACAGAACCCCTTTCAGCAACAAGGGTCTGCTCTCTTAAT ACACCTCGGAAATCTATCCA
Downstream 100 bases:
>100_bases CTGAAGTCATGCCCCAACTCACGCTGCATCCATTCCAGAAAACGCCTCACCCGTGGAAACCCCGCATGCGCCTTCGGGAA AACCAGGTGGTGTGCGGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MSAQRSLVILARGGYAARGVLYLIIGIFALLAAHDSTKPKDSHKSLEALLSQPFGYFLVGLVVAGLLAFAAWRVLQAIRD VDHHGTQLKGLVIRAGLFAGGLVNGALAFFALGLLVSGSRRSSHSAEQTKDWLAHLLSWEHSNLLLYLIALIPLGVGVAH IIKGWKASFEKYFEADEEVMRYVRPVSRFGLIARGVVFMEIALLLAVSGSAYQAMDPPGMKEALDALQNLPAGWLVLMVM ALGLIAFSVYSFSEACWRKINMDVLQ
Sequences:
>Translated_266_residues MSAQRSLVILARGGYAARGVLYLIIGIFALLAAHDSTKPKDSHKSLEALLSQPFGYFLVGLVVAGLLAFAAWRVLQAIRD VDHHGTQLKGLVIRAGLFAGGLVNGALAFFALGLLVSGSRRSSHSAEQTKDWLAHLLSWEHSNLLLYLIALIPLGVGVAH IIKGWKASFEKYFEADEEVMRYVRPVSRFGLIARGVVFMEIALLLAVSGSAYQAMDPPGMKEALDALQNLPAGWLVLMVM ALGLIAFSVYSFSEACWRKINMDVLQ >Mature_265_residues SAQRSLVILARGGYAARGVLYLIIGIFALLAAHDSTKPKDSHKSLEALLSQPFGYFLVGLVVAGLLAFAAWRVLQAIRDV DHHGTQLKGLVIRAGLFAGGLVNGALAFFALGLLVSGSRRSSHSAEQTKDWLAHLLSWEHSNLLLYLIALIPLGVGVAHI IKGWKASFEKYFEADEEVMRYVRPVSRFGLIARGVVFMEIALLLAVSGSAYQAMDPPGMKEALDALQNLPAGWLVLMVMA LGLIAFSVYSFSEACWRKINMDVLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009597 [H]
Pfam domain/function: PF06724 DUF1206 [H]
EC number: NA
Molecular weight: Translated: 28937; Mature: 28806
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQRSLVILARGGYAARGVLYLIIGIFALLAAHDSTKPKDSHKSLEALLSQPFGYFLVG CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH LVVAGLLAFAAWRVLQAIRDVDHHGTQLKGLVIRAGLFAGGLVNGALAFFALGLLVSGSR HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RSSHSAEQTKDWLAHLLSWEHSNLLLYLIALIPLGVGVAHIIKGWKASFEKYFEADEEVM CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH RYVRPVSRFGLIARGVVFMEIALLLAVSGSAYQAMDPPGMKEALDALQNLPAGWLVLMVM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH ALGLIAFSVYSFSEACWRKINMDVLQ HHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SAQRSLVILARGGYAARGVLYLIIGIFALLAAHDSTKPKDSHKSLEALLSQPFGYFLVG CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH LVVAGLLAFAAWRVLQAIRDVDHHGTQLKGLVIRAGLFAGGLVNGALAFFALGLLVSGSR HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RSSHSAEQTKDWLAHLLSWEHSNLLLYLIALIPLGVGVAHIIKGWKASFEKYFEADEEVM CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH RYVRPVSRFGLIARGVVFMEIALLLAVSGSAYQAMDPPGMKEALDALQNLPAGWLVLMVM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH ALGLIAFSVYSFSEACWRKINMDVLQ HHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377; 8550462 [H]