The gene/protein map for NC_009381 is currently unavailable.
Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

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The map label for this gene is yhdF [H]

Identifier: 77458920

GI number: 77458920

Start: 3104487

End: 3105344

Strand: Reverse

Name: yhdF [H]

Synonym: Pfl01_2695

Alternate gene names: 77458920

Gene position: 3105344-3104487 (Counterclockwise)

Preceding gene: 77458921

Following gene: 77458919

Centisome position: 48.23

GC content: 62.0

Gene sequence:

>858_bases
ATGACTGACTATCCAAAACCCCCGTTCCCGAAACAGGCGCAACCGGTTCCCGGTTCGCAGCGCAAGATGGAGCCGTACCC
CGATTGCGGCGAACAGAGCTACACCGGCTCCGGTCGGCTGGCCGGCAAGATTGCCTTGATCACCGGCGCCGACAGCGGCA
TCGGCCGGGCGGTGGCCATTGCCTTCGCCCGCGAAGGTGCCGATGTGGCGGTCGCCTATTTGAATGAACATGAAGATGCC
AAGGAAACCGCGCGCTGGGTCGAACAGGCCGGTCGCCAGTGCCTGTTGCTGCCTGGTGACATTGCGCAGAAAGCCCAGTG
CCAGGCGTTGGTGGATCAAACCGTTGAGCACTTCGGCCGCATCGACGTGCTGGTCAACAACGCGGCCTTCCAGATGACCC
ATGAAACCTTCGAGGAGATTCCCGACGACGAATGGGTGATGACCTTCGACGTCAACATCACCGCGATCTTCCGCCTGTGT
CAGGCCGCCATCAAACACATGGGACCTGGCTCCTCCATCATCAACACCAGTTCGATCAACTCGGACATGCCCAAGCCCAC
CCTGCTCGCCTACGCCACCACCAAAGGCGCGATCGCCAATTTCACCGGTGGTCTGGCGCAAATGCTCGGCCCGAGGGAAA
TCCGCGTGAATTGCGTCGCACCGGGGCCGATCTGGACGCCGCTGATCGTCTCGACCATGCCCGATGAGGAAGTGCAGCAT
TTTGGCGAGCAAACACCACTGGGGCGTCCCGGCCAGCCAGTGGAGGTCGCGCCGATCTACGTACTGCTGGCATCGGATGA
AGCCAGCTACATCACCGGCCAGCGCTACGGCGTGACCGGCGGCAAACCGATGCTCTGA

Upstream 100 bases:

>100_bases
GGTAATCACGTCAGGGCAAACCCAAGCGTCAATCCGATCGAACTCAGCGCAAACGGGCCGGGTCAACCGGCCTACCTGCC
CTGAGACCCGGAGATTGACG

Downstream 100 bases:

>100_bases
ACCGCCTGCCAGAAAAAGTGAACCGCTGGACACGGCGACCTCTCCATACCTTCATGGCCCGTTCGGGTTGCAAGAGATCA
GGAGGTCGTCATGTCTGCGC

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTDYPKPPFPKQAQPVPGSQRKMEPYPDCGEQSYTGSGRLAGKIALITGADSGIGRAVAIAFAREGADVAVAYLNEHEDA
KETARWVEQAGRQCLLLPGDIAQKAQCQALVDQTVEHFGRIDVLVNNAAFQMTHETFEEIPDDEWVMTFDVNITAIFRLC
QAAIKHMGPGSSIINTSSINSDMPKPTLLAYATTKGAIANFTGGLAQMLGPREIRVNCVAPGPIWTPLIVSTMPDEEVQH
FGEQTPLGRPGQPVEVAPIYVLLASDEASYITGQRYGVTGGKPML

Sequences:

>Translated_285_residues
MTDYPKPPFPKQAQPVPGSQRKMEPYPDCGEQSYTGSGRLAGKIALITGADSGIGRAVAIAFAREGADVAVAYLNEHEDA
KETARWVEQAGRQCLLLPGDIAQKAQCQALVDQTVEHFGRIDVLVNNAAFQMTHETFEEIPDDEWVMTFDVNITAIFRLC
QAAIKHMGPGSSIINTSSINSDMPKPTLLAYATTKGAIANFTGGLAQMLGPREIRVNCVAPGPIWTPLIVSTMPDEEVQH
FGEQTPLGRPGQPVEVAPIYVLLASDEASYITGQRYGVTGGKPML
>Mature_284_residues
TDYPKPPFPKQAQPVPGSQRKMEPYPDCGEQSYTGSGRLAGKIALITGADSGIGRAVAIAFAREGADVAVAYLNEHEDAK
ETARWVEQAGRQCLLLPGDIAQKAQCQALVDQTVEHFGRIDVLVNNAAFQMTHETFEEIPDDEWVMTFDVNITAIFRLCQ
AAIKHMGPGSSIINTSSINSDMPKPTLLAYATTKGAIANFTGGLAQMLGPREIRVNCVAPGPIWTPLIVSTMPDEEVQHF
GEQTPLGRPGQPVEVAPIYVLLASDEASYITGQRYGVTGGKPML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=32.7935222672065, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=33.984375, Blast_Score=118, Evalue=7e-27,
Organism=Homo sapiens, GI59889578, Length=230, Percent_Identity=32.6086956521739, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=33.7301587301587, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=32.2448979591837, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=29.0076335877863, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=30.9236947791165, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=30.2788844621514, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=31.4285714285714, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=28.4, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI4758504, Length=248, Percent_Identity=28.2258064516129, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=30.4878048780488, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI224922801, Length=167, Percent_Identity=32.9341317365269, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=31.8181818181818, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI4504505, Length=235, Percent_Identity=27.2340425531915, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=29.1208791208791, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI310128830, Length=205, Percent_Identity=31.7073170731707, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI310115468, Length=205, Percent_Identity=31.7073170731707, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI83715985, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI7706318, Length=212, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI40254986, Length=197, Percent_Identity=29.4416243654822, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI40807363, Length=118, Percent_Identity=35.5932203389831, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI209862901, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19923983, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI210032110, Length=187, Percent_Identity=27.807486631016, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1789378, Length=285, Percent_Identity=47.719298245614, Blast_Score=269, Evalue=1e-73,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=37.5510204081633, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=36.6255144032922, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=33.4630350194552, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=33.8775510204082, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=32.9268292682927, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=33.0677290836653, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=32.520325203252, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=33.0612244897959, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.6065573770492, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=32.183908045977, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=28.4, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787545, Length=252, Percent_Identity=25, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=35.0943396226415, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=32.8301886792453, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=33.976833976834, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=32.8, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=32.5490196078431, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=31.8181818181818, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=31.3008130081301, Blast_Score=117, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=33.2075471698113, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=32.9365079365079, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=31.25, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=31.7164179104478, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=31.4606741573034, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=32.2097378277154, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=31.1111111111111, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=30.7407407407407, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=274, Percent_Identity=31.7518248175182, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=31.6793893129771, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=29.5454545454545, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=31.8681318681319, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=29.0566037735849, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=30.5343511450382, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=29.296875, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=28.9377289377289, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=28.4046692607004, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=26.7399267399267, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=232, Percent_Identity=30.1724137931034, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=27.7992277992278, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=29.7959183673469, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=30, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=209, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=26.984126984127, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=261, Percent_Identity=25.2873563218391, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=225, Percent_Identity=29.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322226, Length=209, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=26.0162601626016, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=286, Percent_Identity=27.972027972028, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=194, Percent_Identity=26.8041237113402, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=38.0952380952381, Blast_Score=140, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=35.4838709677419, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=36, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=33.4645669291339, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=30.4878048780488, Blast_Score=110, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=33.6032388663968, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=32.8063241106719, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=25.4826254826255, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24580925, Length=200, Percent_Identity=29.5, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281364892, Length=172, Percent_Identity=31.9767441860465, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21358495, Length=216, Percent_Identity=27.3148148148148, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24649181, Length=221, Percent_Identity=28.0542986425339, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30728; Mature: 30597

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTDYPKPPFPKQAQPVPGSQRKMEPYPDCGEQSYTGSGRLAGKIALITGADSGIGRAVAI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEE
AFAREGADVAVAYLNEHEDAKETARWVEQAGRQCLLLPGDIAQKAQCQALVDQTVEHFGR
EEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
IDVLVNNAAFQMTHETFEEIPDDEWVMTFDVNITAIFRLCQAAIKHMGPGSSIINTSSIN
EEEEECCCHHEEEHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEECCCCC
SDMPKPTLLAYATTKGAIANFTGGLAQMLGPREIRVNCVAPGPIWTPLIVSTMPDEEVQH
CCCCCCEEEEEECCCCCHHHHCCHHHHHCCCCEEEEEEECCCCCCCHHEEECCCHHHHHH
FGEQTPLGRPGQPVEVAPIYVLLASDEASYITGQRYGVTGGKPML
HHCCCCCCCCCCCEEEEEEEEEEECCCCCEECCCEECCCCCCCCC
>Mature Secondary Structure 
TDYPKPPFPKQAQPVPGSQRKMEPYPDCGEQSYTGSGRLAGKIALITGADSGIGRAVAI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEE
AFAREGADVAVAYLNEHEDAKETARWVEQAGRQCLLLPGDIAQKAQCQALVDQTVEHFGR
EEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
IDVLVNNAAFQMTHETFEEIPDDEWVMTFDVNITAIFRLCQAAIKHMGPGSSIINTSSIN
EEEEECCCHHEEEHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEECCCCC
SDMPKPTLLAYATTKGAIANFTGGLAQMLGPREIRVNCVAPGPIWTPLIVSTMPDEEVQH
CCCCCCEEEEEECCCCCHHHHCCHHHHHCCCCEEEEEEECCCCCCCHHEEECCCHHHHHH
FGEQTPLGRPGQPVEVAPIYVLLASDEASYITGQRYGVTGGKPML
HHCCCCCCCCCCCEEEEEEEEEEECCCCCEECCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]