| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ycdJ [C]
Identifier: 77458776
GI number: 77458776
Start: 2922381
End: 2923406
Strand: Reverse
Name: ycdJ [C]
Synonym: Pfl01_2551
Alternate gene names: 77458776
Gene position: 2923406-2922381 (Counterclockwise)
Preceding gene: 77458777
Following gene: 77458775
Centisome position: 45.41
GC content: 61.11
Gene sequence:
>1026_bases ATGTCTGTATCGCTGACCCGCTGGCTGCCCGGCCTGCTGATGACCGCCGCCCTGCCCCTGCTCGCACACGCCGAAGGCCC GCAATACGGCCCGGAACTGCAAGGTTTCGAGTATCCCTACACCCTCAAGCACTTTGCCTTTCAGTCCCAGGGCAAGTCGC TGCAGATGGGTTACATGGACGTCGCCGCCCACGGCAAGGCCAACGGGCGCACCGTGGTGCTGATGCACGGCAAGAATTTT TGCGGCGCGACCTGGGACAGTTCGATCAAGGCCCTGAGCGAAGCCGGTTACCGGGTGGTCGCCCCGGATCAGATCGGTTT CTGTACTTCCAGCAAACCCGATCACTACCAGTACACCTTCCAGCAACTGGCGGCCAACACCCAGCAGTTGCTCAAGGCGC TGGGCATCCAGAAGGCCACCCTGCTCGGTCATTCCACCGGCGGCATGCTCGCCACCCGTTATGCGCTGCAATACCCGGAT CAGGTCGAGCAACTGGCGCTGGTCAACCCGATCGGCCTGGAAGACTGGAAAGCCCTCGGCGTGCCGTACCGTAGCGTCGA TCAGTGGTATCAGCGCGAATTGAAAGTCACCGCCCAAGGCATTCGCGACTATGAACGCACGACCTATTACGACGGCCGCT GGAAACCGGAATTCGACCGCTGGGTCGACATGCTCGCCGGCCTCAGCAACGGCCCGGGCAAGACTCAGGTCGCATGGAAC TCGGCGCTGATCTACGACATGATCTTCACCCAGCCGGTGTACTACGAGTTCAAGGACCTGAAGATGCCGACACTGCTGCT GATCGGCACCTCCGACACCACCGCCATCGGCAAGGACATCGCCCCGCCCGAAGTGAAAGCCAAAATCGGTCACTACGAAG TGCTCGGCAAGCAGGTGGCGAAACTGATTCCTCAGTCCACGCTGGTGGAATTCCCCGGCATGGGCCACGCCCCGCAGATG GAAGAACCGGCGAAATTCCACGAAGCACTGCTGGGCTGGCTGGAAAAAACCAATCCCGTTCGTTGA
Upstream 100 bases:
>100_bases GGCTGGCTCGGTTGAACGATCGGGCCCAAGGATTGCCTGTGTTTAACGTCGCCCTAATCCGGCCGTTCCAGCATCGGCCG ATTTCTTGTGGAGTTGTCCT
Downstream 100 bases:
>100_bases AGAGGTAACGCTGATGGCGGTGCAGATTGCGGTGATCGATGACTGGCAGGACGTCGCGCGGGGCGCAGTCGACTGGTCGG TGCTCGACAGTCTCGGCGAA
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Chloride peroxidase [H]
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MSVSLTRWLPGLLMTAALPLLAHAEGPQYGPELQGFEYPYTLKHFAFQSQGKSLQMGYMDVAAHGKANGRTVVLMHGKNF CGATWDSSIKALSEAGYRVVAPDQIGFCTSSKPDHYQYTFQQLAANTQQLLKALGIQKATLLGHSTGGMLATRYALQYPD QVEQLALVNPIGLEDWKALGVPYRSVDQWYQRELKVTAQGIRDYERTTYYDGRWKPEFDRWVDMLAGLSNGPGKTQVAWN SALIYDMIFTQPVYYEFKDLKMPTLLLIGTSDTTAIGKDIAPPEVKAKIGHYEVLGKQVAKLIPQSTLVEFPGMGHAPQM EEPAKFHEALLGWLEKTNPVR
Sequences:
>Translated_341_residues MSVSLTRWLPGLLMTAALPLLAHAEGPQYGPELQGFEYPYTLKHFAFQSQGKSLQMGYMDVAAHGKANGRTVVLMHGKNF CGATWDSSIKALSEAGYRVVAPDQIGFCTSSKPDHYQYTFQQLAANTQQLLKALGIQKATLLGHSTGGMLATRYALQYPD QVEQLALVNPIGLEDWKALGVPYRSVDQWYQRELKVTAQGIRDYERTTYYDGRWKPEFDRWVDMLAGLSNGPGKTQVAWN SALIYDMIFTQPVYYEFKDLKMPTLLLIGTSDTTAIGKDIAPPEVKAKIGHYEVLGKQVAKLIPQSTLVEFPGMGHAPQM EEPAKFHEALLGWLEKTNPVR >Mature_340_residues SVSLTRWLPGLLMTAALPLLAHAEGPQYGPELQGFEYPYTLKHFAFQSQGKSLQMGYMDVAAHGKANGRTVVLMHGKNFC GATWDSSIKALSEAGYRVVAPDQIGFCTSSKPDHYQYTFQQLAANTQQLLKALGIQKATLLGHSTGGMLATRYALQYPDQ VEQLALVNPIGLEDWKALGVPYRSVDQWYQRELKVTAQGIRDYERTTYYDGRWKPEFDRWVDMLAGLSNGPGKTQVAWNS ALIYDMIFTQPVYYEFKDLKMPTLLLIGTSDTTAIGKDIAPPEVKAKIGHYEVLGKQVAKLIPQSTLVEFPGMGHAPQME EPAKFHEALLGWLEKTNPVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial non-heme bromo- and chloro- peroxidases family [H]
Homologues:
Organism=Homo sapiens, GI27597073, Length=103, Percent_Identity=37.8640776699029, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =1.11.1.10 [H]
Molecular weight: Translated: 38051; Mature: 37920
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSLTRWLPGLLMTAALPLLAHAEGPQYGPELQGFEYPYTLKHFAFQSQGKSLQMGYMD CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCEE VAAHGKANGRTVVLMHGKNFCGATWDSSIKALSEAGYRVVAPDQIGFCTSSKPDHYQYTF HCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHH QQLAANTQQLLKALGIQKATLLGHSTGGMLATRYALQYPDQVEQLALVNPIGLEDWKALG HHHHHHHHHHHHHHCCCHHHEEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHC VPYRSVDQWYQRELKVTAQGIRDYERTTYYDGRWKPEFDRWVDMLAGLSNGPGKTQVAWN CCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEC SALIYDMIFTQPVYYEFKDLKMPTLLLIGTSDTTAIGKDIAPPEVKAKIGHYEVLGKQVA HHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCHHHHHCCHHHHHHHHHH KLIPQSTLVEFPGMGHAPQMEEPAKFHEALLGWLEKTNPVR HHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SVSLTRWLPGLLMTAALPLLAHAEGPQYGPELQGFEYPYTLKHFAFQSQGKSLQMGYMD CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCEE VAAHGKANGRTVVLMHGKNFCGATWDSSIKALSEAGYRVVAPDQIGFCTSSKPDHYQYTF HCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHH QQLAANTQQLLKALGIQKATLLGHSTGGMLATRYALQYPDQVEQLALVNPIGLEDWKALG HHHHHHHHHHHHHHCCCHHHEEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHC VPYRSVDQWYQRELKVTAQGIRDYERTTYYDGRWKPEFDRWVDMLAGLSNGPGKTQVAWN CCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEC SALIYDMIFTQPVYYEFKDLKMPTLLLIGTSDTTAIGKDIAPPEVKAKIGHYEVLGKQVA HHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCHHHHHCCHHHHHHHHHH KLIPQSTLVEFPGMGHAPQMEEPAKFHEALLGWLEKTNPVR HHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]