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The map label for this gene is yqhC [H]

Identifier: 77458699

GI number: 77458699

Start: 2828656

End: 2829588

Strand: Reverse

Name: yqhC [H]

Synonym: Pfl01_2474

Alternate gene names: 77458699

Gene position: 2829588-2828656 (Counterclockwise)

Preceding gene: 77458701

Following gene: 77458698

Centisome position: 43.95

GC content: 63.67

Gene sequence:

>933_bases
ATGATCCCGACCCCTCTGCCCCAGGAATCGCCTTTGGCCGTGCACATCGACCCGCGTGTGAACGCACCGGGTGACTTCGC
CACGTCGATACCCGGGCTGTCGCTGTTTCGTCGCGACCAGCCGGCGCCCCCCGTTGTGTGCATGATCGAGCCCAGCCTGA
TTCTCGTGGGCCGCGGCGAAAAGCGCTTGTGGGTCGGTGGTGAGGGTTACAGCTATGACCCGTCGCGGTTTCTGGTCACG
TCGCTGGATCTGCCCGCCAACTCCGAAGTGATGCTCGCCAGTCCTGAACAGCCCTGTGTCGGCCTCGTGCTGAAGCTGGA
TGTCAGCATGCTTGCCGAGGTCATCACCAAGAGTGGCTTACCCGCAAAACGCCAGCCATCAACGGGTACGGGTGCCGCGA
TTGGCAGCCTGTCGTCAGCGCTGGAAGACGCGCTCGATCGCCTGCTGGCCCTGCTCGATGAACCCGAGGCGATCCCGGTC
CTGGCGCCGCTGATTCTGCGGGAAATCCACTACCGGTTGCTGCACACCGACCAAGGCCCACGGCTGCGGCAGATCACTGC
CGTCGACGGTCAGGGTTATCGCATCGCCAAGGCCATCGACTGGCTCAAGGTCAACTACACCGATGCCCTGCGCATCGATG
ATCTGGCCGCGCGGGTGCAGATGAGCGCGCCGACCTTTCACCATCATTTCCGCCAGCTCACCGGCATGAGTCCGTTGCAG
TACCAGAAATGGCTGCGACTCAACGAAGCCCGCCGACTGATGCTGGTCGAGCGCCTCGACGTTTCGCGCGCGGCGTTTGC
AGTCGGCTATGAAAGTCCTTCGCAGTTCAGCCGCGAATATGGCCGGCTGTTCGGCACCGCACCGAGCCGCGACATGGCCC
TTTTGCGCGGGCAGCCATTCGAGGCAGCAGCGCTCGGCACAGTCGCGAATTGA

Upstream 100 bases:

>100_bases
CATTCCTCTTGAATGCTTGCCTGATCCTCTGGCGATGCAGGGAGATGGATAGGAAACGTCTCGCGCGCGCATTAGAGTTC
GGTCAAAGGAGTGAGCCCAC

Downstream 100 bases:

>100_bases
ACGAAAACCGGTGATGCGCCCCGCCGCGTGTCACCGTTCATAACAATGCACGTCAACCGATGATCAAGCGGGTGAACCAT
GGAACTACGAATCAACCAGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MIPTPLPQESPLAVHIDPRVNAPGDFATSIPGLSLFRRDQPAPPVVCMIEPSLILVGRGEKRLWVGGEGYSYDPSRFLVT
SLDLPANSEVMLASPEQPCVGLVLKLDVSMLAEVITKSGLPAKRQPSTGTGAAIGSLSSALEDALDRLLALLDEPEAIPV
LAPLILREIHYRLLHTDQGPRLRQITAVDGQGYRIAKAIDWLKVNYTDALRIDDLAARVQMSAPTFHHHFRQLTGMSPLQ
YQKWLRLNEARRLMLVERLDVSRAAFAVGYESPSQFSREYGRLFGTAPSRDMALLRGQPFEAAALGTVAN

Sequences:

>Translated_310_residues
MIPTPLPQESPLAVHIDPRVNAPGDFATSIPGLSLFRRDQPAPPVVCMIEPSLILVGRGEKRLWVGGEGYSYDPSRFLVT
SLDLPANSEVMLASPEQPCVGLVLKLDVSMLAEVITKSGLPAKRQPSTGTGAAIGSLSSALEDALDRLLALLDEPEAIPV
LAPLILREIHYRLLHTDQGPRLRQITAVDGQGYRIAKAIDWLKVNYTDALRIDDLAARVQMSAPTFHHHFRQLTGMSPLQ
YQKWLRLNEARRLMLVERLDVSRAAFAVGYESPSQFSREYGRLFGTAPSRDMALLRGQPFEAAALGTVAN
>Mature_310_residues
MIPTPLPQESPLAVHIDPRVNAPGDFATSIPGLSLFRRDQPAPPVVCMIEPSLILVGRGEKRLWVGGEGYSYDPSRFLVT
SLDLPANSEVMLASPEQPCVGLVLKLDVSMLAEVITKSGLPAKRQPSTGTGAAIGSLSSALEDALDRLLALLDEPEAIPV
LAPLILREIHYRLLHTDQGPRLRQITAVDGQGYRIAKAIDWLKVNYTDALRIDDLAARVQMSAPTFHHHFRQLTGMSPLQ
YQKWLRLNEARRLMLVERLDVSRAAFAVGYESPSQFSREYGRLFGTAPSRDMALLRGQPFEAAALGTVAN

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=287, Percent_Identity=32.404181184669, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34007; Mature: 34007

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPTPLPQESPLAVHIDPRVNAPGDFATSIPGLSLFRRDQPAPPVVCMIEPSLILVGRGE
CCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCHHHHHCCCCCCCEEEEECCCEEEEECCC
KRLWVGGEGYSYDPSRFLVTSLDLPANSEVMLASPEQPCVGLVLKLDVSMLAEVITKSGL
CEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PAKRQPSTGTGAAIGSLSSALEDALDRLLALLDEPEAIPVLAPLILREIHYRLLHTDQGP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
RLRQITAVDGQGYRIAKAIDWLKVNYTDALRIDDLAARVQMSAPTFHHHFRQLTGMSPLQ
CEEEEEEECCCCEEEEHHHEEEEECCCCCEEHHHHHHHEECCCCHHHHHHHHHHCCCHHH
YQKWLRLNEARRLMLVERLDVSRAAFAVGYESPSQFSREYGRLFGTAPSRDMALLRGQPF
HHHHHHHHHHHHHHHHHHHCHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCC
EAAALGTVAN
CHHHCCCCCC
>Mature Secondary Structure
MIPTPLPQESPLAVHIDPRVNAPGDFATSIPGLSLFRRDQPAPPVVCMIEPSLILVGRGE
CCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCHHHHHCCCCCCCEEEEECCCEEEEECCC
KRLWVGGEGYSYDPSRFLVTSLDLPANSEVMLASPEQPCVGLVLKLDVSMLAEVITKSGL
CEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
PAKRQPSTGTGAAIGSLSSALEDALDRLLALLDEPEAIPVLAPLILREIHYRLLHTDQGP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
RLRQITAVDGQGYRIAKAIDWLKVNYTDALRIDDLAARVQMSAPTFHHHFRQLTGMSPLQ
CEEEEEEECCCCEEEEHHHEEEEECCCCCEEHHHHHHHEECCCCHHHHHHHHHHCCCHHH
YQKWLRLNEARRLMLVERLDVSRAAFAVGYESPSQFSREYGRLFGTAPSRDMALLRGQPF
HHHHHHHHHHHHHHHHHHHCHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCC
EAAALGTVAN
CHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]