| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77458567
Identifier: 77458567
GI number: 77458567
Start: 2699468
End: 2700523
Strand: Direct
Name: 77458567
Synonym: Pfl01_2340
Alternate gene names: NA
Gene position: 2699468-2700523 (Clockwise)
Preceding gene: 77458566
Following gene: 77458568
Centisome position: 41.93
GC content: 63.07
Gene sequence:
>1056_bases ATGCACGGTTCAATCAAGCAGTTCGCACGTCATTGCCTCGCCGGGGCGCTGCTCTCGGCGCTGGCCCTCAATGCGCAGGC CAAGGCCCTGCCCGGCGCACCGGCGCCGTTCGATAAAGGTCAGGTACAGATTGCGCTGGTCGGCTATCTGTTTTCCGGGG ATTTCCCTGAAGCCTATCTGCGCGGCGTGGAGAAACAGACCGAAGCGCTGGGCGCCAACCTGCGGGTGTTCGACGCGCGG CAACAGGCGGCGAGCCAGGGCGAGATGATCGATCAGGCTGCCGACCTCGGTGTCGACGGGATCATCGTGCAATTGGGTCT CGCGGAAACCCTCAAAGGGCCAATTGATCGTGCCCTCGCCAAAGGCATCAAGGTCGTCGCGTTCGACGTCGACCTGAACA CGCCGCAAGTGACTCAGGTCGAGCAGGATCACCATGCACTGGCGCGACTGGCACTCGATCAAGCGGTCAAGGACAACGGC ACCCGTTTCGACGCCGGGTATGTCTACATCAGCGGCTTCACGCCGATGGAGCGGCGTGACGAGATCTGGAGTCAGGTCAA GGCGAGCAATCCGGGGATCATTGAGAAGGCGCGCTTCGGCACGCTCAATCCGCCGATTGCCAACTCGGTGGCGGATCAGG CCAGCGCCGTGCTGCGGGCCAATCCGGGGATCAGCGTGATTTTCGCGCCGTTCGACGAGTTCGCCAAAGGTGCGAAGATC GCCGTCGATGAGGCCGGTCTCAGCCGCAAGGTGAAGATCTACAGCGCCGACATTTCCACCGCCGACATCCAGATCATGAA AGAGCCGGACAGCGCCTGGGCCGCCACCGCTGCGGTCAATCCGCAAGTGGCCGGCGCGATCAGCGTGCGCAGTCTGGCGA TGCTGATTGCCGGGGAAAATCCGGGGCACAAGGTGCTGGTGCCGCCGACCCTGATCACCCGTCAGCAACTGCTGGATCTG GACGTGAAAAACGTACGGGATCTGGGGCAAAAACTGCCGGCCTTCGGTGACACCGCCAATGTCGCGCGGGCACCGTGGAT TCCCGTGGCGAACTGA
Upstream 100 bases:
>100_bases TTCGTCAAGGGACTGGTGCTGGTGCTGGCCCTGATGTTCACCTTCGGCCTCGCGCATCGGGCGCGCTGAGCCGGTTCATT GATGCTTCAAGGAAAGATCC
Downstream 100 bases:
>100_bases GGAACCGACATGCACGACAAGGCTGCGCGTCTGCGCAAGAGCCGTTCGCCGACAGCCGATGTGGCGCTGGGCGAACGGCT GCCGCCGGGGCAGGTGCTGA
Product: ABC transporter binding protein
Products: NA
Alternate protein names: Transport System Protein; Ribose ABC Transporter; ABC-Type Sugar Transport System Periplasmic Component; Sugar ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MHGSIKQFARHCLAGALLSALALNAQAKALPGAPAPFDKGQVQIALVGYLFSGDFPEAYLRGVEKQTEALGANLRVFDAR QQAASQGEMIDQAADLGVDGIIVQLGLAETLKGPIDRALAKGIKVVAFDVDLNTPQVTQVEQDHHALARLALDQAVKDNG TRFDAGYVYISGFTPMERRDEIWSQVKASNPGIIEKARFGTLNPPIANSVADQASAVLRANPGISVIFAPFDEFAKGAKI AVDEAGLSRKVKIYSADISTADIQIMKEPDSAWAATAAVNPQVAGAISVRSLAMLIAGENPGHKVLVPPTLITRQQLLDL DVKNVRDLGQKLPAFGDTANVARAPWIPVAN
Sequences:
>Translated_351_residues MHGSIKQFARHCLAGALLSALALNAQAKALPGAPAPFDKGQVQIALVGYLFSGDFPEAYLRGVEKQTEALGANLRVFDAR QQAASQGEMIDQAADLGVDGIIVQLGLAETLKGPIDRALAKGIKVVAFDVDLNTPQVTQVEQDHHALARLALDQAVKDNG TRFDAGYVYISGFTPMERRDEIWSQVKASNPGIIEKARFGTLNPPIANSVADQASAVLRANPGISVIFAPFDEFAKGAKI AVDEAGLSRKVKIYSADISTADIQIMKEPDSAWAATAAVNPQVAGAISVRSLAMLIAGENPGHKVLVPPTLITRQQLLDL DVKNVRDLGQKLPAFGDTANVARAPWIPVAN >Mature_351_residues MHGSIKQFARHCLAGALLSALALNAQAKALPGAPAPFDKGQVQIALVGYLFSGDFPEAYLRGVEKQTEALGANLRVFDAR QQAASQGEMIDQAADLGVDGIIVQLGLAETLKGPIDRALAKGIKVVAFDVDLNTPQVTQVEQDHHALARLALDQAVKDNG TRFDAGYVYISGFTPMERRDEIWSQVKASNPGIIEKARFGTLNPPIANSVADQASAVLRANPGISVIFAPFDEFAKGAKI AVDEAGLSRKVKIYSADISTADIQIMKEPDSAWAATAAVNPQVAGAISVRSLAMLIAGENPGHKVLVPPTLITRQQLLDL DVKNVRDLGQKLPAFGDTANVARAPWIPVAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37241; Mature: 37241
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHGSIKQFARHCLAGALLSALALNAQAKALPGAPAPFDKGQVQIALVGYLFSGDFPEAYL CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHH RGVEKQTEALGANLRVFDARQQAASQGEMIDQAADLGVDGIIVQLGLAETLKGPIDRALA HHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHHH KGIKVVAFDVDLNTPQVTQVEQDHHALARLALDQAVKDNGTRFDAGYVYISGFTPMERRD CCCEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCHHHHH EIWSQVKASNPGIIEKARFGTLNPPIANSVADQASAVLRANPGISVIFAPFDEFAKGAKI HHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHEECCCCCEEEECCHHHHCCCCEE AVDEAGLSRKVKIYSADISTADIQIMKEPDSAWAATAAVNPQVAGAISVRSLAMLIAGEN EEECCCCCEEEEEEECCCCCEEEEEEECCCCHHEEEEECCCCHHHHHHHHHEEEEEECCC PGHKVLVPPTLITRQQLLDLDVKNVRDLGQKLPAFGDTANVARAPWIPVAN CCCEEEECCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHGSIKQFARHCLAGALLSALALNAQAKALPGAPAPFDKGQVQIALVGYLFSGDFPEAYL CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHH RGVEKQTEALGANLRVFDARQQAASQGEMIDQAADLGVDGIIVQLGLAETLKGPIDRALA HHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHHH KGIKVVAFDVDLNTPQVTQVEQDHHALARLALDQAVKDNGTRFDAGYVYISGFTPMERRD CCCEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCHHHHH EIWSQVKASNPGIIEKARFGTLNPPIANSVADQASAVLRANPGISVIFAPFDEFAKGAKI HHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHEECCCCCEEEECCHHHHCCCCEE AVDEAGLSRKVKIYSADISTADIQIMKEPDSAWAATAAVNPQVAGAISVRSLAMLIAGEN EEECCCCCEEEEEEECCCCCEEEEEEECCCCHHEEEEECCCCHHHHHHHHHEEEEEECCC PGHKVLVPPTLITRQQLLDLDVKNVRDLGQKLPAFGDTANVARAPWIPVAN CCCEEEECCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA