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The map label for this gene is rbsC [H]

Identifier: 77458566

GI number: 77458566

Start: 2698411

End: 2699436

Strand: Direct

Name: rbsC [H]

Synonym: Pfl01_2339

Alternate gene names: 77458566

Gene position: 2698411-2699436 (Clockwise)

Preceding gene: 77458565

Following gene: 77458567

Centisome position: 41.91

GC content: 64.91

Gene sequence:

>1026_bases
GTGCCTGATTCGAGTTCCCTGTTGTCATCCGCCCCGGCGCCGTCCGAGCGCTTCGTGCAAGCGCTGATCCGCTACGGCCT
GCTGTGGGTGCTGGCGTTGATCGTGGTGTTTTTCAGTGTCGCGGAACCGGCGTTTCTGCGGGTCGGCAACCTGTTCAGCA
TTCTGCAGTCGGTGTCGATTGTCGCGCTGTTGGCGTTGGGCGTGACGCTGACCATGGCTGTCGGCGGACTGGATTTGTCG
ATCGGCGCGGTGGCGGCGATGAGCCTGATGATAGCCAGTTACGTGATGGTGGTGCTCGGCTGGGGCGCGGTGCCGGCGGT
GCTGATCAGCCTGGCCGGTGGCGCGCTGGTGGGGCTGCTCAACGGCTGGCTGATCGTGAAGATGCGCGTGCCGGACATTC
TCGCCACGCTCGGCAGCATGTTTCTGGTGATCGGCGTGCAACTGATCCCCACGGGCGGCCGCTCGATTGCGGTGGGTATG
ACTTTACCCAACGGCGATGAAGCCGAGGGTTCGTTCAGTACGCTGTTTCTTGCATTGGGCCGAGGACGACTGTGGGACAT
CGTGCCGGTTCCGGTGTTGATCACGGCGGTGGTCGCGGTGGCGGTGTGGTTGTTTCTCGAACGCACGCGCATCGGCCGGT
TGTTCTATGCGATTGGCGGCAACGAGCAGGCGGCGCGTCTGGCCGGTGCGCCGGTGCAGCGCTTCAAGTTGCTGGCTTAT
GTGCTGTCGGCGCTGCTCGCATCGCTCGGCGGTTTGTTGTTGGCGGCGCGGTTGGGGCGCGGCGATGTCAGCTCCGGCAA
CGGTTTGGTGCTCGATGCGCTGGGCGCTGCGCTGATCGGTTTCGCGGTGCTCGGGGCGAAGAAGCCCAACGCGTTCGGCA
CGCTGGTCGGCGCGCTGCTGGTGGCCTCGTTGCTCAACGGCCTGACCATGCTCAACGCGCCGTATTACGCGCAGGATTTC
GTCAAGGGACTGGTGCTGGTGCTGGCCCTGATGTTCACCTTCGGCCTCGCGCATCGGGCGCGCTGA

Upstream 100 bases:

>100_bases
TACCCGCGTGCCGGGCTGGATCGCGCCACCCTGATCGCCGCGCTGGCCGGCAACGATCCGCAAAATTCTATTGTTCACGC
CGCGCCAAGGAGTAGAGCGA

Downstream 100 bases:

>100_bases
GCCGGTTCATTGATGCTTCAAGGAAAGATCCATGCACGGTTCAATCAAGCAGTTCGCACGTCATTGCCTCGCCGGGGCGC
TGCTCTCGGCGCTGGCCCTC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MPDSSSLLSSAPAPSERFVQALIRYGLLWVLALIVVFFSVAEPAFLRVGNLFSILQSVSIVALLALGVTLTMAVGGLDLS
IGAVAAMSLMIASYVMVVLGWGAVPAVLISLAGGALVGLLNGWLIVKMRVPDILATLGSMFLVIGVQLIPTGGRSIAVGM
TLPNGDEAEGSFSTLFLALGRGRLWDIVPVPVLITAVVAVAVWLFLERTRIGRLFYAIGGNEQAARLAGAPVQRFKLLAY
VLSALLASLGGLLLAARLGRGDVSSGNGLVLDALGAALIGFAVLGAKKPNAFGTLVGALLVASLLNGLTMLNAPYYAQDF
VKGLVLVLALMFTFGLAHRAR

Sequences:

>Translated_341_residues
MPDSSSLLSSAPAPSERFVQALIRYGLLWVLALIVVFFSVAEPAFLRVGNLFSILQSVSIVALLALGVTLTMAVGGLDLS
IGAVAAMSLMIASYVMVVLGWGAVPAVLISLAGGALVGLLNGWLIVKMRVPDILATLGSMFLVIGVQLIPTGGRSIAVGM
TLPNGDEAEGSFSTLFLALGRGRLWDIVPVPVLITAVVAVAVWLFLERTRIGRLFYAIGGNEQAARLAGAPVQRFKLLAY
VLSALLASLGGLLLAARLGRGDVSSGNGLVLDALGAALIGFAVLGAKKPNAFGTLVGALLVASLLNGLTMLNAPYYAQDF
VKGLVLVLALMFTFGLAHRAR
>Mature_340_residues
PDSSSLLSSAPAPSERFVQALIRYGLLWVLALIVVFFSVAEPAFLRVGNLFSILQSVSIVALLALGVTLTMAVGGLDLSI
GAVAAMSLMIASYVMVVLGWGAVPAVLISLAGGALVGLLNGWLIVKMRVPDILATLGSMFLVIGVQLIPTGGRSIAVGMT
LPNGDEAEGSFSTLFLALGRGRLWDIVPVPVLITAVVAVAVWLFLERTRIGRLFYAIGGNEQAARLAGAPVQRFKLLAYV
LSALLASLGGLLLAARLGRGDVSSGNGLVLDALGAALIGFAVLGAKKPNAFGTLVGALLVASLLNGLTMLNAPYYAQDFV
KGLVLVLALMFTFGLAHRAR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=38.8704318936877, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI145693152, Length=344, Percent_Identity=29.0697674418605, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788896, Length=353, Percent_Identity=32.0113314447592, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1789992, Length=358, Percent_Identity=29.0502793296089, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790524, Length=332, Percent_Identity=28.9156626506024, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787793, Length=291, Percent_Identity=30.9278350515464, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788471, Length=319, Percent_Identity=31.0344827586207, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI145693214, Length=269, Percent_Identity=34.9442379182156, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082395, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787794, Length=330, Percent_Identity=27.5757575757576, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35338; Mature: 35207

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSSSLLSSAPAPSERFVQALIRYGLLWVLALIVVFFSVAEPAFLRVGNLFSILQSVSI
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VALLALGVTLTMAVGGLDLSIGAVAAMSLMIASYVMVVLGWGAVPAVLISLAGGALVGLL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
NGWLIVKMRVPDILATLGSMFLVIGVQLIPTGGRSIAVGMTLPNGDEAEGSFSTLFLALG
CCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC
RGRLWDIVPVPVLITAVVAVAVWLFLERTRIGRLFYAIGGNEQAARLAGAPVQRFKLLAY
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCHHHHHHHHHH
VLSALLASLGGLLLAARLGRGDVSSGNGLVLDALGAALIGFAVLGAKKPNAFGTLVGALL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VASLLNGLTMLNAPYYAQDFVKGLVLVLALMFTFGLAHRAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PDSSSLLSSAPAPSERFVQALIRYGLLWVLALIVVFFSVAEPAFLRVGNLFSILQSVSI
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VALLALGVTLTMAVGGLDLSIGAVAAMSLMIASYVMVVLGWGAVPAVLISLAGGALVGLL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
NGWLIVKMRVPDILATLGSMFLVIGVQLIPTGGRSIAVGMTLPNGDEAEGSFSTLFLALG
CCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC
RGRLWDIVPVPVLITAVVAVAVWLFLERTRIGRLFYAIGGNEQAARLAGAPVQRFKLLAY
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCHHHHHHHHHH
VLSALLASLGGLLLAARLGRGDVSSGNGLVLDALGAALIGFAVLGAKKPNAFGTLVGALL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VASLLNGLTMLNAPYYAQDFVKGLVLVLALMFTFGLAHRAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]