| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is benD [H]
Identifier: 77458551
GI number: 77458551
Start: 2680172
End: 2680933
Strand: Direct
Name: benD [H]
Synonym: Pfl01_2324
Alternate gene names: 77458551
Gene position: 2680172-2680933 (Clockwise)
Preceding gene: 77458550
Following gene: 255961275
Centisome position: 41.63
GC content: 65.09
Gene sequence:
>762_bases ATGAACAACAGATTCGCCAACAAGGTCGCGCTGGTCACCGGCGCGGCGCAGGGCATCGGTCGCCGGGTGTGCGAGCGCTT CCTGGAGGAGGGCGCGCAGGTCATTGCCGTCGACCGCTCCGGACTGGTTCACGAACTGCAAGGCGAGGGCGTGCTGTCGC TGACCGCCGACCTTGAGCAATACGCCGATTGCGCCCGGGTGATGAGCGCCGCCGTCGATACGTTCGGGCGTCTGGATGTG CTGGTCAACAACGTCGGCGGCACCATTTGGGCCAAGCCGTTCGAGCACTACGAAGTCGAGCAGATCGAGGCCGAAGTGCG CCGTTCGCTGTTCCCGACGCTTTGGTGCTGCCACGCCGCATTGCCGTACATGCTCAAGCAGGATCGCGGGGCGATCGTCA ATGTGTCGTCGATTGCGACCCGCAGCCTGAACCGTGTTCCCTACGGCGCGGCCAAGGGCGGGATCAATGCACTGACCGCC TGTCTGGCCTTCGAGAATGCCGAGCGCGGGATCCGGGTTAACGCCACCGCGCCCGGCGGCACCGAAGCGCCGCCTCGGCG CATCCCGCGCAACGCCGCCGAACAATCCGCGCAGGAGCAGGCCTGGTATCAGGAAATCGTCGCGCAAACCCTCGATAGCA GCCTGATGAAACGCTACGGAACCATTGACGAACAGGTCGGCGCGATCCTGTTTCTCGCCTCGGACGACGCCTCCTACATC ACCGGTGTAACCCTGCCGGTCGGTGGCGGAGACCTCGGTTGA
Upstream 100 bases:
>100_bases CGTCAGTCAGTACATCCGCGAGCAGGGCATCACGCCGGCGAACTTCTACTACGAGAAATTCGCGGCGGCCTGAATCTTCT TTCTGAATTGCGAGGGTGTC
Downstream 100 bases:
>100_bases TCACGCTTGAATGGACACTGAAATGAACCGGATCCTGATTGAAAACCTGTCGGCGATCATCGTCGACCTTCCGACTATCC GCCCGCACAAACTGGCGATG
Product: 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
Products: NA
Alternate protein names: 2-hydro-1,2-dihydroxybenzoate dehydrogenase; DHB dehydrogenase; Cis-1,2-dihydroxy-3,4-cyclohexadiene-1-carboxylate dehydrogenase; Cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase [H]
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MNNRFANKVALVTGAAQGIGRRVCERFLEEGAQVIAVDRSGLVHELQGEGVLSLTADLEQYADCARVMSAAVDTFGRLDV LVNNVGGTIWAKPFEHYEVEQIEAEVRRSLFPTLWCCHAALPYMLKQDRGAIVNVSSIATRSLNRVPYGAAKGGINALTA CLAFENAERGIRVNATAPGGTEAPPRRIPRNAAEQSAQEQAWYQEIVAQTLDSSLMKRYGTIDEQVGAILFLASDDASYI TGVTLPVGGGDLG
Sequences:
>Translated_253_residues MNNRFANKVALVTGAAQGIGRRVCERFLEEGAQVIAVDRSGLVHELQGEGVLSLTADLEQYADCARVMSAAVDTFGRLDV LVNNVGGTIWAKPFEHYEVEQIEAEVRRSLFPTLWCCHAALPYMLKQDRGAIVNVSSIATRSLNRVPYGAAKGGINALTA CLAFENAERGIRVNATAPGGTEAPPRRIPRNAAEQSAQEQAWYQEIVAQTLDSSLMKRYGTIDEQVGAILFLASDDASYI TGVTLPVGGGDLG >Mature_253_residues MNNRFANKVALVTGAAQGIGRRVCERFLEEGAQVIAVDRSGLVHELQGEGVLSLTADLEQYADCARVMSAAVDTFGRLDV LVNNVGGTIWAKPFEHYEVEQIEAEVRRSLFPTLWCCHAALPYMLKQDRGAIVNVSSIATRSLNRVPYGAAKGGINALTA CLAFENAERGIRVNATAPGGTEAPPRRIPRNAAEQSAQEQAWYQEIVAQTLDSSLMKRYGTIDEQVGAILFLASDDASYI TGVTLPVGGGDLG
Specific function: Degradation of 2-hydro-1,2-dihydroxy benzoate (DHB) to catechol [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=262, Percent_Identity=34.3511450381679, Blast_Score=104, Evalue=6e-23, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=31.6602316602317, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI126723750, Length=261, Percent_Identity=30.6513409961686, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI59889578, Length=243, Percent_Identity=29.2181069958848, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=30.1960784313725, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI31542939, Length=248, Percent_Identity=31.4516129032258, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI15277342, Length=269, Percent_Identity=29.368029739777, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI10190704, Length=267, Percent_Identity=30.3370786516854, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI5031737, Length=264, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=27.4900398406374, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=32.1243523316062, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI224922801, Length=166, Percent_Identity=33.7349397590361, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=34.0540540540541, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI4758504, Length=188, Percent_Identity=28.7234042553192, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=32.5396825396825, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=31.25, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=30.0395256916996, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787905, Length=262, Percent_Identity=29.0076335877863, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI2367175, Length=265, Percent_Identity=30.5660377358491, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790717, Length=266, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788459, Length=260, Percent_Identity=27.6923076923077, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=28.6259541984733, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=28.1124497991968, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=24.901185770751, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787820, Length=215, Percent_Identity=26.5116279069767, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789057, Length=264, Percent_Identity=26.5151515151515, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=30.5343511450382, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI115534694, Length=264, Percent_Identity=32.1969696969697, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=31.3725490196078, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=30.3149606299213, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=31.2267657992565, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=27.4509803921569, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=28.1954887218045, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17531453, Length=194, Percent_Identity=32.9896907216495, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193204405, Length=193, Percent_Identity=29.5336787564767, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI25147288, Length=260, Percent_Identity=27.6923076923077, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI72000259, Length=190, Percent_Identity=30.5263157894737, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=26.8382352941176, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=30.6122448979592, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=29.4117647058824, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=26.9662921348315, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=29.368029739777, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17563726, Length=189, Percent_Identity=29.1005291005291, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=28.3582089552239, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=28.3582089552239, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=26.4150943396226, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560150, Length=270, Percent_Identity=25.5555555555556, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=26.7924528301887, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17544670, Length=193, Percent_Identity=26.4248704663212, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562906, Length=192, Percent_Identity=28.125, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=28.9377289377289, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17568967, Length=211, Percent_Identity=27.0142180094787, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538182, Length=195, Percent_Identity=30.2564102564103, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=28.4974093264249, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=261, Percent_Identity=27.9693486590038, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24644339, Length=259, Percent_Identity=33.976833976834, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=32.4110671936759, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI28571526, Length=264, Percent_Identity=31.4393939393939, Blast_Score=111, Evalue=6e-25, Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=31.3953488372093, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI21355319, Length=268, Percent_Identity=30.2238805970149, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24644337, Length=260, Percent_Identity=33.4615384615385, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24639444, Length=261, Percent_Identity=30.2681992337165, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=31.9587628865979, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI17737361, Length=195, Percent_Identity=29.7435897435897, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.3.1.25 [H]
Molecular weight: Translated: 27197; Mature: 27197
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNRFANKVALVTGAAQGIGRRVCERFLEEGAQVIAVDRSGLVHELQGEGVLSLTADLEQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCEEEHHHHHHH YADCARVMSAAVDTFGRLDVLVNNVGGTIWAKPFEHYEVEQIEAEVRRSLFPTLWCCHAA HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LPYMLKQDRGAIVNVSSIATRSLNRVPYGAAKGGINALTACLAFENAERGIRVNATAPGG HHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC TEAPPRRIPRNAAEQSAQEQAWYQEIVAQTLDSSLMKRYGTIDEQVGAILFLASDDASYI CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCCEE TGVTLPVGGGDLG EEEEEECCCCCCC >Mature Secondary Structure MNNRFANKVALVTGAAQGIGRRVCERFLEEGAQVIAVDRSGLVHELQGEGVLSLTADLEQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCEEEHHHHHHH YADCARVMSAAVDTFGRLDVLVNNVGGTIWAKPFEHYEVEQIEAEVRRSLFPTLWCCHAA HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LPYMLKQDRGAIVNVSSIATRSLNRVPYGAAKGGINALTACLAFENAERGIRVNATAPGG HHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC TEAPPRRIPRNAAEQSAQEQAWYQEIVAQTLDSSLMKRYGTIDEQVGAILFLASDDASYI CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCCEE TGVTLPVGGGDLG EEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1740120 [H]