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The map label for this gene is cph2 [H]

Identifier: 77458524

GI number: 77458524

Start: 2647887

End: 2649488

Strand: Reverse

Name: cph2 [H]

Synonym: Pfl01_2297

Alternate gene names: 77458524

Gene position: 2649488-2647887 (Counterclockwise)

Preceding gene: 77458526

Following gene: 77458523

Centisome position: 41.15

GC content: 63.11

Gene sequence:

>1602_bases
ATGCCCGGACGCAACACGCAAGCGCCCACGCCAGATCAAGCACCGCGCGCGACCCGCAAGGGCGTGAAGGCCGGCTCGAC
CTTTCGCCTGACCGTCAGTTTCATGCTGATGGTGGTCGTGGCTTTTCTGGCGGTCGAGAGCTGGCGGACGTGGCGCGACT
ATCGTTCGGTCTTTGCCTCCGCGCGTGATTCGGTGACCAACCTTGCTCGCGCCACGGCGCAGCATGCCGAGGACACCATT
CGCCAGGTCGATGTGCTGACCGCCGGGCTGGCCGAGCGTGTCGAAGGCGATGGGCTGCAGAACCTGGATGTGGCACGCAT
TCACAAGCTGCTCGTTCAGCAGTCGAAAATCATGCCGCAGCTGCACGGCCTGTTCATCTACGGCCCGGACGGCCATTGGA
TCGTGACCGACAAGGAGGTCACGCCCGAAACCGCCAACAACGCTGACCGCGATTATTTCCAGTACCACCGCACCCATGAA
GACCGGCGCGTGCGCATCGGTCAGGTGGTGGAGAGCCGTTCCACCCATGACCTGATCATTCCGATCTCGCGCCGTTTGAA
TAACCCCGACGGCTCGTTCGCCGGCGTTCTGCTGGGGACGGTCAAGGTCAGTTATTTCGTCGATTACTACGGTGATTTCC
GTATCGACGACAAAGGCGCGCTGGTGCTGGCGATGCGCGACGGCACGATCCTCGTGCGCCGGCCGTTCATTACCTCGGTG
GTCGGAAAAAGCCTGGCTAACAGCGAGATCTTCAAGACCTACCTGCCCAACGCCAACCAGGGCATTGTCCAGATCAGGGC
GGTGGTCGACGACACCGAACGCCTTTACGGCTATCGCGCCCTGACCACCTACCCGCTGGTGGTCGAGGCCGGTTTGTCCC
GGGATTCCATCGTTGCGCCGTGGCGTCAGGACCTGCTGAAAAACGGCTTCGTGCTGGTGTTCCTGATTCTGGTGCTGGCC
TGTTTCGGGCTCATCGTCTTGAGCCAGTTGCGCCAGCGGATGGCGATGGAACGGGAGATCCGTTCCGCGCACAAGACCAT
GCGCGACATGGCGCTGACCGACAGCCTCACAGGCCTCGGCAATCGCCGTCGACTGGACGCGGCGCTGGCGGACGAGATTC
GCCTGGCCCGGCGTCAAGGTTCTCCGCTGTCATTGATCATGCTCGATGTCGACTACTTCAAGCGCTACAACGACCAGTAC
GGCCATGCCGCTGGCGACGACTGCCTGATCGCGGTCGGCGACGGCATCCGCAAAGCGGTCAAGCGGCCTTCGGACCTGGC
CGTGCGCTACGGCGGCGAGGAATTCACCGTGCTCCTGCCCAACACCGACAGCGCCGGAGCGATTCAGGTGGCCGAAGACA
TTCTGCAGACCATTCGCTCGCTGGAGCTTGAACATGCCGGGCATCCGCTGGGGTATGTCACTGCGAGTGCGGGGATCACC
ACGCGTTATCCGGTGGACGACGCGGTGACCCCGGCGACTTTGCTCAAGGCGGCCGATACCTGTCTGTATCAGGCCAAGCA
GCAAGGGCGGAATCGCTGGTGCTCGGCGCAGGCATCCCGGCAAATCCAGCCGATTGCGGCGATGCCGCGCACGGATCGCT
GA

Upstream 100 bases:

>100_bases
TCAACTCAAACTGCCAGCCAGTTCACACAGCCGGCCCGACCTTCGCGCCTATCCTTGTCATAATGCTCACCCGCTCAGAC
CGACCTCCAGGGAAATGTTG

Downstream 100 bases:

>100_bases
GCGAGCCCGCGCTTCACGATTTATTTACCGGCTCAACCTTGGAATCAGCCCACACTCCCTCATATCAAGGAACATCTGCG
ACCCATTCGAGAGGAAGGAC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MPGRNTQAPTPDQAPRATRKGVKAGSTFRLTVSFMLMVVVAFLAVESWRTWRDYRSVFASARDSVTNLARATAQHAEDTI
RQVDVLTAGLAERVEGDGLQNLDVARIHKLLVQQSKIMPQLHGLFIYGPDGHWIVTDKEVTPETANNADRDYFQYHRTHE
DRRVRIGQVVESRSTHDLIIPISRRLNNPDGSFAGVLLGTVKVSYFVDYYGDFRIDDKGALVLAMRDGTILVRRPFITSV
VGKSLANSEIFKTYLPNANQGIVQIRAVVDDTERLYGYRALTTYPLVVEAGLSRDSIVAPWRQDLLKNGFVLVFLILVLA
CFGLIVLSQLRQRMAMEREIRSAHKTMRDMALTDSLTGLGNRRRLDAALADEIRLARRQGSPLSLIMLDVDYFKRYNDQY
GHAAGDDCLIAVGDGIRKAVKRPSDLAVRYGGEEFTVLLPNTDSAGAIQVAEDILQTIRSLELEHAGHPLGYVTASAGIT
TRYPVDDAVTPATLLKAADTCLYQAKQQGRNRWCSAQASRQIQPIAAMPRTDR

Sequences:

>Translated_533_residues
MPGRNTQAPTPDQAPRATRKGVKAGSTFRLTVSFMLMVVVAFLAVESWRTWRDYRSVFASARDSVTNLARATAQHAEDTI
RQVDVLTAGLAERVEGDGLQNLDVARIHKLLVQQSKIMPQLHGLFIYGPDGHWIVTDKEVTPETANNADRDYFQYHRTHE
DRRVRIGQVVESRSTHDLIIPISRRLNNPDGSFAGVLLGTVKVSYFVDYYGDFRIDDKGALVLAMRDGTILVRRPFITSV
VGKSLANSEIFKTYLPNANQGIVQIRAVVDDTERLYGYRALTTYPLVVEAGLSRDSIVAPWRQDLLKNGFVLVFLILVLA
CFGLIVLSQLRQRMAMEREIRSAHKTMRDMALTDSLTGLGNRRRLDAALADEIRLARRQGSPLSLIMLDVDYFKRYNDQY
GHAAGDDCLIAVGDGIRKAVKRPSDLAVRYGGEEFTVLLPNTDSAGAIQVAEDILQTIRSLELEHAGHPLGYVTASAGIT
TRYPVDDAVTPATLLKAADTCLYQAKQQGRNRWCSAQASRQIQPIAAMPRTDR
>Mature_532_residues
PGRNTQAPTPDQAPRATRKGVKAGSTFRLTVSFMLMVVVAFLAVESWRTWRDYRSVFASARDSVTNLARATAQHAEDTIR
QVDVLTAGLAERVEGDGLQNLDVARIHKLLVQQSKIMPQLHGLFIYGPDGHWIVTDKEVTPETANNADRDYFQYHRTHED
RRVRIGQVVESRSTHDLIIPISRRLNNPDGSFAGVLLGTVKVSYFVDYYGDFRIDDKGALVLAMRDGTILVRRPFITSVV
GKSLANSEIFKTYLPNANQGIVQIRAVVDDTERLYGYRALTTYPLVVEAGLSRDSIVAPWRQDLLKNGFVLVFLILVLAC
FGLIVLSQLRQRMAMEREIRSAHKTMRDMALTDSLTGLGNRRRLDAALADEIRLARRQGSPLSLIMLDVDYFKRYNDQYG
HAAGDDCLIAVGDGIRKAVKRPSDLAVRYGGEEFTVLLPNTDSAGAIQVAEDILQTIRSLELEHAGHPLGYVTASAGITT
RYPVDDAVTPATLLKAADTCLYQAKQQGRNRWCSAQASRQIQPIAAMPRTDR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=33.8624338624339, Blast_Score=102, Evalue=9e-23,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=36.6459627329193, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=31.3609467455621, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87081977, Length=214, Percent_Identity=34.5794392523364, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=32.843137254902, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081881, Length=197, Percent_Identity=30.9644670050761, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=32.9608938547486, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=34.0909090909091, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=33.125, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=216, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=30.7262569832402, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=194, Percent_Identity=29.3814432989691, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 59356; Mature: 59224

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRNTQAPTPDQAPRATRKGVKAGSTFRLTVSFMLMVVVAFLAVESWRTWRDYRSVFAS
CCCCCCCCCCCCCCCHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARDSVTNLARATAQHAEDTIRQVDVLTAGLAERVEGDGLQNLDVARIHKLLVQQSKIMPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHH
LHGLFIYGPDGHWIVTDKEVTPETANNADRDYFQYHRTHEDRRVRIGQVVESRSTHDLII
HCCEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE
PISRRLNNPDGSFAGVLLGTVKVSYFVDYYGDFRIDDKGALVLAMRDGTILVRRPFITSV
EHHHHCCCCCCCHHHHHHHHHHHHHHEECCCCEEECCCCEEEEEEECCEEEEECCHHHHH
VGKSLANSEIFKTYLPNANQGIVQIRAVVDDTERLYGYRALTTYPLVVEAGLSRDSIVAP
HHHHHCCCHHHHHHCCCCCCCEEEEEEHHCCHHHHHCCHHHHHCCHHEECCCCCCCEECH
WRQDLLKNGFVLVFLILVLACFGLIVLSQLRQRMAMEREIRSAHKTMRDMALTDSLTGLG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NRRRLDAALADEIRLARRQGSPLSLIMLDVDYFKRYNDQYGHAAGDDCLIAVGDGIRKAV
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCCCCCEEEEECHHHHHHH
KRPSDLAVRYGGEEFTVLLPNTDSAGAIQVAEDILQTIRSLELEHAGHPLGYVTASAGIT
CCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
TRYPVDDAVTPATLLKAADTCLYQAKQQGRNRWCSAQASRQIQPIAAMPRTDR
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHCCCCCCC
>Mature Secondary Structure 
PGRNTQAPTPDQAPRATRKGVKAGSTFRLTVSFMLMVVVAFLAVESWRTWRDYRSVFAS
CCCCCCCCCCCCCCHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARDSVTNLARATAQHAEDTIRQVDVLTAGLAERVEGDGLQNLDVARIHKLLVQQSKIMPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHH
LHGLFIYGPDGHWIVTDKEVTPETANNADRDYFQYHRTHEDRRVRIGQVVESRSTHDLII
HCCEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE
PISRRLNNPDGSFAGVLLGTVKVSYFVDYYGDFRIDDKGALVLAMRDGTILVRRPFITSV
EHHHHCCCCCCCHHHHHHHHHHHHHHEECCCCEEECCCCEEEEEEECCEEEEECCHHHHH
VGKSLANSEIFKTYLPNANQGIVQIRAVVDDTERLYGYRALTTYPLVVEAGLSRDSIVAP
HHHHHCCCHHHHHHCCCCCCCEEEEEEHHCCHHHHHCCHHHHHCCHHEECCCCCCCEECH
WRQDLLKNGFVLVFLILVLACFGLIVLSQLRQRMAMEREIRSAHKTMRDMALTDSLTGLG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NRRRLDAALADEIRLARRQGSPLSLIMLDVDYFKRYNDQYGHAAGDDCLIAVGDGIRKAV
CCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCCCCCEEEEECHHHHHHH
KRPSDLAVRYGGEEFTVLLPNTDSAGAIQVAEDILQTIRSLELEHAGHPLGYVTASAGIT
CCCCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
TRYPVDDAVTPATLLKAADTCLYQAKQQGRNRWCSAQASRQIQPIAAMPRTDR
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]