| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77458307
Identifier: 77458307
GI number: 77458307
Start: 2365579
End: 2366895
Strand: Direct
Name: 77458307
Synonym: Pfl01_2080
Alternate gene names: NA
Gene position: 2365579-2366895 (Clockwise)
Preceding gene: 77458304
Following gene: 77458308
Centisome position: 36.74
GC content: 65.0
Gene sequence:
>1317_bases ATGAGCGCTCCCATTCAGCTGTCCGTCGAACGGCTGCACGTCAACCAGTACACCAACGGCCTGATCGGCCCAGGCCAGAA GATGCGCGGCCCGCTGGCCGACGGCGGCACGCTGGTCACGGGGACGCCGCCGGGGTGCTGGGGGCCGATGATCACGCCGT CATTCGAGGGCGGCCATGAAGTGACGCAACCGGTGTACATCGAAGGCGCCGAGGTCGGCGATGCGGTAGCGATCAAGATC AAACGCATGCAGGTCACGTCCCACGCCACGTCGTCAGGAGTGATGAGTTTTGTTGAAGGGCGATATCACGGCGATCCGTT CGTCGCCAAATACTGCAGCCAGTGCGGCACCGAACACCCGGCCAGCCATGTGGAGGGGATCGGCGAGGAGGCGATTCGCT GCAACCATTGCGGCGCCGAAGTCAGTGCGTTTCGCTTCAGCCACGGTTACGTGATCGTGTTCGACGCCGAGCACCAGGTC AGCCTGACGGTCAATCAAGAGGTGGCGGATCGTCTGGCCGGCAAGGCGTCGCAGGTGTCGGCGTTGCCTGAAATGGCGGC GCAGCACTCGATTCTGTCCCTGGCCCGGGCCGACATGCCCGGCGTGGCGGCGCACATGCGGCCGTTTCTCGGCAACATCG GCACCACGCCGTCGCGGGATCTGCCGGACTCGCATAACTGCGCCGATTTCGGCCAGTACCTGATCGGCGCCCCGCACCGC TTCGGCATGACCCGCGAGGAATTGCATGCGGCCAAGACCGATGGCCACATGGACACCAATTCAATCCGCGAGGGTTGCGT GCTGATCTGTCCGGTCAAGGTGCCGGGCGCCGGGGTGTACATGGGCGACATGCACGCGCAGCAGGGCAACGGCGAAATCG CCGGCCACGCCACCGATTGCTCGGGGGAAACCGAGGTACAGGTGCATGTGATCAAGGGCCTGACTCTGGAAGGGCCGATC CTGCTGCAGAACCTCGACGATCTGCCGCCGATGGCCCGGCCGATGAGCGCCGAGCAACTGCGCCATGTTCATGAACTCGG CGCCCGCTGGGGTCAGCACGAGGTTCAGGCCACCGGGCCGATCACCTTCATCGGCAGCGGCGAAAACCTCAACGTCGCGG TGGAGAACGGCCTGCAACGGGCCGCCGCCGTCACCGGCCTGCCATACGATGAAGTGCTCAACCGCGCGACCATCAACGGT TCGATCGACATTAGCCGTTTGCCCGGCACGGTGCGGGTGACGTTCCTGTGCCCGATGGACGTGCTCGATCGCCTCGGCAT TGGTGACCTGGTCCGCGAGAAGTACGACCTCGCGTAA
Upstream 100 bases:
>100_bases CGTGGATACACAGACCGACCATTGCAGCGTTGGCCGGACACAGCGCCGATACAAACCTGCGTTGAACTGAGCCGCCCAGC CTGGCAACGAGGTGATTTCC
Downstream 100 bases:
>100_bases CTCGCCGCTCACCAAGACGGCAGCGGGTCTGTATCCAACTGTGTACAGACCCGCCGCCGATACAAAACCCGCCACTTCCC GCGCATTGCCCACACAGCCG
Product: acetamidase/formamidase
Products: formate; NH3
Alternate protein names: Acetamidase/Formamidase Family Protein
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSAPIQLSVERLHVNQYTNGLIGPGQKMRGPLADGGTLVTGTPPGCWGPMITPSFEGGHEVTQPVYIEGAEVGDAVAIKI KRMQVTSHATSSGVMSFVEGRYHGDPFVAKYCSQCGTEHPASHVEGIGEEAIRCNHCGAEVSAFRFSHGYVIVFDAEHQV SLTVNQEVADRLAGKASQVSALPEMAAQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAPHR FGMTREELHAAKTDGHMDTNSIREGCVLICPVKVPGAGVYMGDMHAQQGNGEIAGHATDCSGETEVQVHVIKGLTLEGPI LLQNLDDLPPMARPMSAEQLRHVHELGARWGQHEVQATGPITFIGSGENLNVAVENGLQRAAAVTGLPYDEVLNRATING SIDISRLPGTVRVTFLCPMDVLDRLGIGDLVREKYDLA
Sequences:
>Translated_438_residues MSAPIQLSVERLHVNQYTNGLIGPGQKMRGPLADGGTLVTGTPPGCWGPMITPSFEGGHEVTQPVYIEGAEVGDAVAIKI KRMQVTSHATSSGVMSFVEGRYHGDPFVAKYCSQCGTEHPASHVEGIGEEAIRCNHCGAEVSAFRFSHGYVIVFDAEHQV SLTVNQEVADRLAGKASQVSALPEMAAQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAPHR FGMTREELHAAKTDGHMDTNSIREGCVLICPVKVPGAGVYMGDMHAQQGNGEIAGHATDCSGETEVQVHVIKGLTLEGPI LLQNLDDLPPMARPMSAEQLRHVHELGARWGQHEVQATGPITFIGSGENLNVAVENGLQRAAAVTGLPYDEVLNRATING SIDISRLPGTVRVTFLCPMDVLDRLGIGDLVREKYDLA >Mature_437_residues SAPIQLSVERLHVNQYTNGLIGPGQKMRGPLADGGTLVTGTPPGCWGPMITPSFEGGHEVTQPVYIEGAEVGDAVAIKIK RMQVTSHATSSGVMSFVEGRYHGDPFVAKYCSQCGTEHPASHVEGIGEEAIRCNHCGAEVSAFRFSHGYVIVFDAEHQVS LTVNQEVADRLAGKASQVSALPEMAAQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAPHRF GMTREELHAAKTDGHMDTNSIREGCVLICPVKVPGAGVYMGDMHAQQGNGEIAGHATDCSGETEVQVHVIKGLTLEGPIL LQNLDDLPPMARPMSAEQLRHVHELGARWGQHEVQATGPITFIGSGENLNVAVENGLQRAAAVTGLPYDEVLNRATINGS IDISRLPGTVRVTFLCPMDVLDRLGIGDLVREKYDLA
Specific function: Unknown
COG id: COG2421
COG function: function code C; Predicted acetamidase/formamidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.5.1.49
Molecular weight: Translated: 46754; Mature: 46622
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPIQLSVERLHVNQYTNGLIGPGQKMRGPLADGGTLVTGTPPGCWGPMITPSFEGGHE CCCCCEEEEEEEEHHHHCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC VTQPVYIEGAEVGDAVAIKIKRMQVTSHATSSGVMSFVEGRYHGDPFVAKYCSQCGTEHP CCCCEEEECCCCCCEEEEEEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCC ASHVEGIGEEAIRCNHCGAEVSAFRFSHGYVIVFDAEHQVSLTVNQEVADRLAGKASQVS HHHHHCCCHHHEEECCCCCCEEEEEEECCEEEEEECCCEEEEEECHHHHHHHCCCHHHHH ALPEMAAQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAPHR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHH FGMTREELHAAKTDGHMDTNSIREGCVLICPVKVPGAGVYMGDMHAQQGNGEIAGHATDC CCCCHHHHHHHHCCCCCCHHHHHCCEEEEEEEECCCCCEEECCCCCCCCCCEEEEEEECC SGETEVQVHVIKGLTLEGPILLQNLDDLPPMARPMSAEQLRHVHELGARWGQHEVQATGP CCCCEEEEEEEECCEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC ITFIGSGENLNVAVENGLQRAAAVTGLPYDEVLNRATINGSIDISRLPGTVRVTFLCPMD EEEEECCCCEEEEHHHHHHHHHHHCCCCHHHHHCCEECCCCEEEEECCCEEEEEEECCHH VLDRLGIGDLVREKYDLA HHHHCCCHHHHHHHHCCC >Mature Secondary Structure SAPIQLSVERLHVNQYTNGLIGPGQKMRGPLADGGTLVTGTPPGCWGPMITPSFEGGHE CCCCEEEEEEEEHHHHCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC VTQPVYIEGAEVGDAVAIKIKRMQVTSHATSSGVMSFVEGRYHGDPFVAKYCSQCGTEHP CCCCEEEECCCCCCEEEEEEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCC ASHVEGIGEEAIRCNHCGAEVSAFRFSHGYVIVFDAEHQVSLTVNQEVADRLAGKASQVS HHHHHCCCHHHEEECCCCCCEEEEEEECCEEEEEECCCEEEEEECHHHHHHHCCCHHHHH ALPEMAAQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAPHR HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHH FGMTREELHAAKTDGHMDTNSIREGCVLICPVKVPGAGVYMGDMHAQQGNGEIAGHATDC CCCCHHHHHHHHCCCCCCHHHHHCCEEEEEEEECCCCCEEECCCCCCCCCCEEEEEEECC SGETEVQVHVIKGLTLEGPILLQNLDDLPPMARPMSAEQLRHVHELGARWGQHEVQATGP CCCCEEEEEEEECCEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC ITFIGSGENLNVAVENGLQRAAAVTGLPYDEVLNRATINGSIDISRLPGTVRVTFLCPMD EEEEECCCCEEEEHHHHHHHHHHHCCCCHHHHHCCEECCCCEEEEECCCEEEEEEECCHH VLDRLGIGDLVREKYDLA HHHHCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: formamide; H2O
Specific reaction: formamide + H2O = formate + NH3
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA