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The map label for this gene is ybhD [H]

Identifier: 77458304

GI number: 77458304

Start: 2362167

End: 2363057

Strand: Direct

Name: ybhD [H]

Synonym: Pfl01_2077

Alternate gene names: 77458304

Gene position: 2362167-2363057 (Clockwise)

Preceding gene: 77458300

Following gene: 77458307

Centisome position: 36.69

GC content: 63.19

Gene sequence:

>891_bases
ATGACCATCAAACAGATACGCGCTTTTCTCGCCGTGGCCCAAAGCCTGAGCTTTGCCGTGGCCTGCGAGCGCCTGCACTT
GTCGCAATCGGCGCTGAGCCTGACCATCAAGGCGCTGGAAGAAGGTTTGGGCGGGCGTCTGTTCAGCCGCAACACGCGCA
ACGTGGCGCTGACCCCGGAGGGCGAATCGCTGCTGCCGCTGGCCCGGCGCCTGATCGCCGACTGGGACAACGCCGAAGAC
GAGATGCGCCAGCGCTTCAGCCTGCAACGCGGGCGGGTGACGCTGGCGGCGATGCCGTCGTTTGCCGGCAATCTGCTGCC
GCCGATCCTCAAGACCTTCCGCGCGCGTTATCCGAACGTCAATGTCACGGTCAACGACGTGATCAACGAGCAAGTGCTGG
AAATGGTTCGCGATCGTCAGGTCGAACTCGGCGTGGCCTTCGAGCCGATGCAGAACACCTCGCTGATGTTCACACCGCTT
TACCGGGATCGCTTCGTCGCCGTGGTGCCGCAGGATTCGCCGCTGGCCGACCGTAGCGACATTGATTGGCAGACCTTGCT
GCAGGAACCGTTCATCACCCTGCAACGACCGTCCACGGTTCGGGTGATGCTGGAAGAACACCTGCAGGCCCGAGGGATGA
AACTGCCGGTGGAGTTTGAAAGCCATCAACTGGCGACGGTCGGGCGGATGGTGGCGAGCGGGCTGGGCGTCAGTGCGGTG
CCGGCGTTGTGTGCCGGGCAGATGCGCGAGTTGGGCGCGCATTGCCTGACCTTGCACGAGCCGGTGGTGGAGCGGGCGAT
TGGCGTGCTGACGGATCCGGGGAATGAACTGTCGGCGGCGGCTCAGGCGCTTTTTGACATTCTCAAGGCTGAGGATTTTG
GACATCTTTGA

Upstream 100 bases:

>100_bases
GTTAAGTTGATTTTTAAGGTTGATTGATTGATAAAGCTCATTAAATGTCCGCCGTGGTCGGCGGACGGATGTTCAGCTTA
GTCCGTCGAGTAACACAACC

Downstream 100 bases:

>100_bases
AATCCATCCCCCTCACCCCAGCCCTCTCCCGGAGGGAGAGGGAGCCGACCGAGTCGTGCTGCTTAGTACATCGACCTGAG
CCACCGAGTCGATTATGGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTIKQIRAFLAVAQSLSFAVACERLHLSQSALSLTIKALEEGLGGRLFSRNTRNVALTPEGESLLPLARRLIADWDNAED
EMRQRFSLQRGRVTLAAMPSFAGNLLPPILKTFRARYPNVNVTVNDVINEQVLEMVRDRQVELGVAFEPMQNTSLMFTPL
YRDRFVAVVPQDSPLADRSDIDWQTLLQEPFITLQRPSTVRVMLEEHLQARGMKLPVEFESHQLATVGRMVASGLGVSAV
PALCAGQMRELGAHCLTLHEPVVERAIGVLTDPGNELSAAAQALFDILKAEDFGHL

Sequences:

>Translated_296_residues
MTIKQIRAFLAVAQSLSFAVACERLHLSQSALSLTIKALEEGLGGRLFSRNTRNVALTPEGESLLPLARRLIADWDNAED
EMRQRFSLQRGRVTLAAMPSFAGNLLPPILKTFRARYPNVNVTVNDVINEQVLEMVRDRQVELGVAFEPMQNTSLMFTPL
YRDRFVAVVPQDSPLADRSDIDWQTLLQEPFITLQRPSTVRVMLEEHLQARGMKLPVEFESHQLATVGRMVASGLGVSAV
PALCAGQMRELGAHCLTLHEPVVERAIGVLTDPGNELSAAAQALFDILKAEDFGHL
>Mature_295_residues
TIKQIRAFLAVAQSLSFAVACERLHLSQSALSLTIKALEEGLGGRLFSRNTRNVALTPEGESLLPLARRLIADWDNAEDE
MRQRFSLQRGRVTLAAMPSFAGNLLPPILKTFRARYPNVNVTVNDVINEQVLEMVRDRQVELGVAFEPMQNTSLMFTPLY
RDRFVAVVPQDSPLADRSDIDWQTLLQEPFITLQRPSTVRVMLEEHLQARGMKLPVEFESHQLATVGRMVASGLGVSAVP
ALCAGQMRELGAHCLTLHEPVVERAIGVLTDPGNELSAAAQALFDILKAEDFGHL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=286, Percent_Identity=33.5664335664336, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=31.2714776632302, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=28.9198606271777, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788887, Length=246, Percent_Identity=31.7073170731707, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI2367136, Length=241, Percent_Identity=29.8755186721992, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=23.9057239057239, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=27.5303643724696, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787530, Length=247, Percent_Identity=25.1012145748988, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788481, Length=240, Percent_Identity=27.0833333333333, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787601, Length=144, Percent_Identity=34.7222222222222, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081904, Length=216, Percent_Identity=26.3888888888889, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789204, Length=255, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789173, Length=277, Percent_Identity=26.7148014440433, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=24.6913580246914, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786401, Length=160, Percent_Identity=30.625, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790208, Length=252, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=24.390243902439, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790262, Length=241, Percent_Identity=24.4813278008299, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787589, Length=141, Percent_Identity=31.9148936170213, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=134, Percent_Identity=40.2985074626866, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=247, Percent_Identity=23.8866396761134, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788626, Length=244, Percent_Identity=29.0983606557377, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI48994962, Length=82, Percent_Identity=41.4634146341463, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=23.1660231660232, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32779; Mature: 32648

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKQIRAFLAVAQSLSFAVACERLHLSQSALSLTIKALEEGLGGRLFSRNTRNVALTPE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCC
GESLLPLARRLIADWDNAEDEMRQRFSLQRGRVTLAAMPSFAGNLLPPILKTFRARYPNV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCHHHCCHHHHHHHHHHHHCCCC
NVTVNDVINEQVLEMVRDRQVELGVAFEPMQNTSLMFTPLYRDRFVAVVPQDSPLADRSD
CEEHHHHHHHHHHHHHHCCCEEECEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC
IDWQTLLQEPFITLQRPSTVRVMLEEHLQARGMKLPVEFESHQLATVGRMVASGLGVSAV
CCHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCHHHH
PALCAGQMRELGAHCLTLHEPVVERAIGVLTDPGNELSAAAQALFDILKAEDFGHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TIKQIRAFLAVAQSLSFAVACERLHLSQSALSLTIKALEEGLGGRLFSRNTRNVALTPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCC
GESLLPLARRLIADWDNAEDEMRQRFSLQRGRVTLAAMPSFAGNLLPPILKTFRARYPNV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCHHHCCHHHHHHHHHHHHCCCC
NVTVNDVINEQVLEMVRDRQVELGVAFEPMQNTSLMFTPLYRDRFVAVVPQDSPLADRSD
CEEHHHHHHHHHHHHHHCCCEEECEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC
IDWQTLLQEPFITLQRPSTVRVMLEEHLQARGMKLPVEFESHQLATVGRMVASGLGVSAV
CCHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCHHHH
PALCAGQMRELGAHCLTLHEPVVERAIGVLTDPGNELSAAAQALFDILKAEDFGHL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]