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The map label for this gene is ycaN [C]

Identifier: 77458299

GI number: 77458299

Start: 2357684

End: 2358610

Strand: Reverse

Name: ycaN [C]

Synonym: Pfl01_2072

Alternate gene names: 77458299

Gene position: 2358610-2357684 (Counterclockwise)

Preceding gene: 77458301

Following gene: 77458296

Centisome position: 36.63

GC content: 63.75

Gene sequence:

>927_bases
ATGATCTTCAAGCATCGCTATCAGGTCGAATCCATGGAAACCCTCGCCAATCTGGAATCTTTCGTCCGCAGCGCCGAGAC
CGGCAGCTTCTCCGCCGCCGCACGGTTGCTGGCGCTGACCCCGGCGGCGGTCAGTCGCAACGTGGCAATTCTTGAACGCA
ACCTCGGCGTGCGGCTGTTTCAGCGCTCGACCCGCAAGCTGTCGCTGACCGAGGTTGGTGAGAGTTTTCTGGCGAGCATC
GGCGGCAACCTCGATGCCTTGCAGGCCGCGATTGCTACGGTGGCGACCGAGCGCGGAGAGCCGGCGGGCGTGCTCAAGAT
CAGCCTGCCGCCGACGTTCGGCATCGATCACATGCTGCCGCTATTGCCGGAGTTTCTGGCGCGCTATCCGTTGATTCGCC
CGGAATGGCACTTCGAAAATCGTCAGGTGGACTTGATCGCCGAGGGTTACGACGTAGCGATTGACGGCGGATTCGAGCTG
ACACCCGGCGTAGTCGCCCGGCCATTGTCGTCCGCCGAAGTGCTGGCGGTGGCGTCGCCGGCGTATCTGGCGGGCCGTAC
CCTGCCGCGACATCCGGCTGATCTCGCCGATCACCAGGGCATCGTCATGCGCGGCCTGCGCACCGGGCGCCTGCGCCAAT
GGCAGATGCACAACGAAACCGGCGAACAGGCCAGCGCCCTGCTCAACCCGAGCATCGTGCTGAATGACCCGATGGCCATG
CGCAAGGCCGCGCTGCTGGGCTTGGGCGTGACGATGCTGGTGCTGCCGGATGTCAGCGCGCAGATCGAACGCGGTGAACT
GGTGCAGCTGTTGCCCGACTGGCAATGCGATGCCGGCGCAATATCGTTGTACTACCCGAGCCGAACCTTGCTGCCGGCCA
AGACCCGAGTGTTCATTGATTTTGTGGTCGAAGCGTTTGGCCGCTAG

Upstream 100 bases:

>100_bases
TGATTCCGATAGTGCTCATGGTGTTCTCCTCAAAGTGGGGTAAGACTCGAAGCGAATCTTGCGCTTGCCATTCCCACTTG
ATTAGCCGGTAATGCCTTGA

Downstream 100 bases:

>100_bases
GCCGCCAGCTGCAGAATCAACCAGGCATTCGCCCCGCTGATCAGCACAAACAATCCCCACGCCAGCACCTGCGTCGGTAA
CCGATTCACAAACGGCCCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MIFKHRYQVESMETLANLESFVRSAETGSFSAAARLLALTPAAVSRNVAILERNLGVRLFQRSTRKLSLTEVGESFLASI
GGNLDALQAAIATVATERGEPAGVLKISLPPTFGIDHMLPLLPEFLARYPLIRPEWHFENRQVDLIAEGYDVAIDGGFEL
TPGVVARPLSSAEVLAVASPAYLAGRTLPRHPADLADHQGIVMRGLRTGRLRQWQMHNETGEQASALLNPSIVLNDPMAM
RKAALLGLGVTMLVLPDVSAQIERGELVQLLPDWQCDAGAISLYYPSRTLLPAKTRVFIDFVVEAFGR

Sequences:

>Translated_308_residues
MIFKHRYQVESMETLANLESFVRSAETGSFSAAARLLALTPAAVSRNVAILERNLGVRLFQRSTRKLSLTEVGESFLASI
GGNLDALQAAIATVATERGEPAGVLKISLPPTFGIDHMLPLLPEFLARYPLIRPEWHFENRQVDLIAEGYDVAIDGGFEL
TPGVVARPLSSAEVLAVASPAYLAGRTLPRHPADLADHQGIVMRGLRTGRLRQWQMHNETGEQASALLNPSIVLNDPMAM
RKAALLGLGVTMLVLPDVSAQIERGELVQLLPDWQCDAGAISLYYPSRTLLPAKTRVFIDFVVEAFGR
>Mature_308_residues
MIFKHRYQVESMETLANLESFVRSAETGSFSAAARLLALTPAAVSRNVAILERNLGVRLFQRSTRKLSLTEVGESFLASI
GGNLDALQAAIATVATERGEPAGVLKISLPPTFGIDHMLPLLPEFLARYPLIRPEWHFENRQVDLIAEGYDVAIDGGFEL
TPGVVARPLSSAEVLAVASPAYLAGRTLPRHPADLADHQGIVMRGLRTGRLRQWQMHNETGEQASALLNPSIVLNDPMAM
RKAALLGLGVTMLVLPDVSAQIERGELVQLLPDWQCDAGAISLYYPSRTLLPAKTRVFIDFVVEAFGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=30.3448275862069, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=30.1003344481605, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=29.0969899665552, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=31.3993174061433, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=29.4915254237288, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=28.3737024221453, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=28.4722222222222, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=32.9411764705882, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788706, Length=168, Percent_Identity=32.7380952380952, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786448, Length=179, Percent_Identity=33.5195530726257, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=30.3964757709251, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=120, Percent_Identity=30.8333333333333, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33604; Mature: 33604

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFKHRYQVESMETLANLESFVRSAETGSFSAAARLLALTPAAVSRNVAILERNLGVRLF
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCEEEECCCCHHHH
QRSTRKLSLTEVGESFLASIGGNLDALQAAIATVATERGEPAGVLKISLPPTFGIDHMLP
HHCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
LLPEFLARYPLIRPEWHFENRQVDLIAEGYDVAIDGGFELTPGVVARPLSSAEVLAVASP
HHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHCCCCCCEEEEEECC
AYLAGRTLPRHPADLADHQGIVMRGLRTGRLRQWQMHNETGEQASALLNPSIVLNDPMAM
HHHHCCCCCCCCCCHHCCCCCEECCCCCCCCEEEECCCCCCHHHHHHCCCCEEECCCHHH
RKAALLGLGVTMLVLPDVSAQIERGELVQLLPDWQCDAGAISLYYPSRTLLPAKTRVFID
HHHHHHHCCEEEEEECCCHHHCCCCCEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHH
FVVEAFGR
HHHHHHCC
>Mature Secondary Structure
MIFKHRYQVESMETLANLESFVRSAETGSFSAAARLLALTPAAVSRNVAILERNLGVRLF
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHCCCEEEECCCCHHHH
QRSTRKLSLTEVGESFLASIGGNLDALQAAIATVATERGEPAGVLKISLPPTFGIDHMLP
HHCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
LLPEFLARYPLIRPEWHFENRQVDLIAEGYDVAIDGGFELTPGVVARPLSSAEVLAVASP
HHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHCCCCCCEEEEEECC
AYLAGRTLPRHPADLADHQGIVMRGLRTGRLRQWQMHNETGEQASALLNPSIVLNDPMAM
HHHHCCCCCCCCCCHHCCCCCEECCCCCCCCEEEECCCCCCHHHHHHCCCCEEECCCHHH
RKAALLGLGVTMLVLPDVSAQIERGELVQLLPDWQCDAGAISLYYPSRTLLPAKTRVFID
HHHHHHHCCEEEEEECCCHHHCCCCCEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHH
FVVEAFGR
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]