| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77458254
Identifier: 77458254
GI number: 77458254
Start: 2311467
End: 2313914
Strand: Direct
Name: 77458254
Synonym: Pfl01_2027
Alternate gene names: NA
Gene position: 2311467-2313914 (Clockwise)
Preceding gene: 77458253
Following gene: 77458255
Centisome position: 35.9
GC content: 65.24
Gene sequence:
>2448_bases ATGGCGCTGCTCAGTCACTGGCGACGCCATCCGGTGCAGTTTTTCAGTGTGCTGACCGGGTTGTGGCTGGCCACCAGCCT GTTGACCGGAGTCGAAGCCCTCAACAGTCAGGCGCGGGACAGTTACGCCCGGGCCAGCCAGTTGATCGGCGGCGAACCCC AGGCCAGTCTGAGCACGCCGAACGGCGCGACGTTCCCGCAACAATGGTTCATCGACCTGCGGCGACAAGGCTGGCCGGTG TCGCCGATGCTGCAAGGGCGCTTGATACTCAAGGGCCACGAAAACCAGCGCCTGCAATTGATGGGCATCGAGCCTGTGTC GTTGCCCGGCGACAGCGCGGTGGCCGGGCAGGCGATGCCAATCGAGCGCATCGTCGAGTTCTTTAGCCCGCCGGGCAGCA CCTGGATTTCTCCCGAGACGTTGCGTGCGCTGAACCTCGCCGAGGGCGCGACCCCGGCCACCGAAACCGGCCAGACGTTG CCGCCGCTGCGAGCGCAAACCGACATGGCCCCCGGCGTGCTGCTGGTGGACATTGGCGTCGCTCAGCGCGTGCTCGAACA GTCCGATCAACTGTCACGTCTGCTGTTGCCGAAGGATTTTCACGCCGACGTCCCGGCCGCGTTCAAGGGCCAGTTGCAGC TCAAGAGCAGTGGCGAGGAAAACAACCTTGCGCGACTGACCGAAAGCTTCCACCTCAACCTCGATGCGCTCGGGTTTCTC TCGTTCATCGTCGGCTTGTTCATTGTTCACGCGGCCATCGGTCTGGCGCTGGAACAGCGCCGGGGATTGCTGCGCACGTT GAGGGCCTGCGGGGTCAGCGCGCGGATGCTGATCGCTTGCCTGATCGTCGAACTCGGCGCGCTGGCGTTGATCGGCGGGT TGTTCGGCGTGGTCAGCGGTTACTGGCTGGCAAGCGTGCTGTTACCGGACGTCGCGGCCAGCCTGCGCGGTCTGTACGGC GCGGAAGTGGCGGGGCAGTTGCGCCTGAGTCCTTGGTGGTGGTTCAGCGGCATCGGCTTGAGCCTGCTCGGCGCGTTGCT GGCCGGGGCCAACAGTCTGCTGCGTGCAGCGCGACTGCCATTGCTGGCGGTGGCGGATCCGCAGGCCTGGCATCAGCAAC ATGCGCGCTGGTTGCGGCGTCAGGGTTGGGTCGCGGGTATCTGTGCAGTGATTGCGCTGGCGGCGTTGGTGTGGGGCAAC AGCCTGGGCAGCGGTTTTGTGTTGATGGCGGGGCTTTTGCTCGGCGCCGCGCTGGCGCTGCCGGTGTTGCTCAGTGCGTT GCTCAACGGTTTGCTCGGTCGCAGCCGCTCGGTGCTCGGGCAGTGGTTTCTCGCCGATTGCCGCCAGCAATTGCCGGCGC TGAGTCTGGCGTTGATGGCGCTGCTGCTGGCGATGGCGGCAAACATCGGTGCCGGCAGCATGACCGCCGGTTTCCGCCAG ACCTTCAACGACTGGCTCGAACAACGGCTCACCGCCGAGCTTTATCTGAACCCGAGCAACCCGGCGCAGGCGCGGGAGCT GTACACCTGGCTCAAACAGCAAGCGAATGTCACCGCGATCATGCCCAACTGGCAGGTCTCTGTGACGCTGCAAGGCTGGC CGGCGGACGTGTTCGGGATCATCGATCATCCGCACTATCGCCAGCACTGGCCGTTGCTCGAATCTCGAGGAGACGACCCG TGGGCGGCGCTGGCCAAGGACGATGCGGTGATGCTCAGCGAACAACTGGCGCGGCGCTTGAAAGTGACGCCGGGCGATCA CCTGTCGATTCCCACGCCGGGCGGGTCGTGGTCGCCGCGCATCGTCGGCATCTACGCCGACTACGGCAATCCCAAGGGCC ATGTGCTGGTCAACAGCAATCACCTGTTGCGCGGCTGGCCACAGCTGACGCCAAACCGCTTCAACCTGCGCATCGACCCG CCGAACATCCCGGCGTTGCTCACGGCCTTGCAGGCACGCTTCCAGCTTGATGACAGCCGGATCGTCGATCAGGCGCGGCT CAAGGGCTGGTCGGTGCAAGTCTTCGAACGCACCTTCGCCGCGACCGCCGCGCTGAATAGCCTGACGCTTGCCGTCGCCG GCGTGGCGCTGTTCATCAGCCTGCTGACCCAGAGTCAGAGCCGTCTCGGCCAGCTCGCACCGTTGTGGGCGTTGGGCGTG ACGCGACGGCAGTTGATGCTGCTCAACCTCGGGGAAACGTGGCTGTTGGCGCTGCTGACGCTGGTGCTGGCGTTGCCTTT GGGCATCGGCCTGGCGTGGTGCCTGGACGCTGTGATCAACGTGCAGGCTTTTGGCTGGCGTCTGCCGCTGCGGGTGTTTC CATGGCAGTTGCTGCAACTGATGGGGCTGGCGCTGCTGGCGACGTTGCTGGCCTCGGCGTGGCCGCTGTATTCGCTGTAC CGCACGCAACCGGCGGACCTGCTGAGGACGTTTGCTCATGAAGACTAG
Upstream 100 bases:
>100_bases TGCTGATGGTCACCCACAGTCAGCGCGTGGCGGCGCGGCTGGCGGAGCGCGTGGTGCTGTCCAGCGGTCGGTTGACGTGA AGGTTTTCCGGCACGCGCTG
Downstream 100 bases:
>100_bases GTTTGCGCTGGTGTTTTTGGCGTTGTTGCTCAGTGGTTGCGATAACTCCGCACCGGAGCAGAAGGGCTTTGCCGGGATGG GCGCTCAGGCGCAGGCGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 815; Mature: 814
Protein sequence:
>815_residues MALLSHWRRHPVQFFSVLTGLWLATSLLTGVEALNSQARDSYARASQLIGGEPQASLSTPNGATFPQQWFIDLRRQGWPV SPMLQGRLILKGHENQRLQLMGIEPVSLPGDSAVAGQAMPIERIVEFFSPPGSTWISPETLRALNLAEGATPATETGQTL PPLRAQTDMAPGVLLVDIGVAQRVLEQSDQLSRLLLPKDFHADVPAAFKGQLQLKSSGEENNLARLTESFHLNLDALGFL SFIVGLFIVHAAIGLALEQRRGLLRTLRACGVSARMLIACLIVELGALALIGGLFGVVSGYWLASVLLPDVAASLRGLYG AEVAGQLRLSPWWWFSGIGLSLLGALLAGANSLLRAARLPLLAVADPQAWHQQHARWLRRQGWVAGICAVIALAALVWGN SLGSGFVLMAGLLLGAALALPVLLSALLNGLLGRSRSVLGQWFLADCRQQLPALSLALMALLLAMAANIGAGSMTAGFRQ TFNDWLEQRLTAELYLNPSNPAQARELYTWLKQQANVTAIMPNWQVSVTLQGWPADVFGIIDHPHYRQHWPLLESRGDDP WAALAKDDAVMLSEQLARRLKVTPGDHLSIPTPGGSWSPRIVGIYADYGNPKGHVLVNSNHLLRGWPQLTPNRFNLRIDP PNIPALLTALQARFQLDDSRIVDQARLKGWSVQVFERTFAATAALNSLTLAVAGVALFISLLTQSQSRLGQLAPLWALGV TRRQLMLLNLGETWLLALLTLVLALPLGIGLAWCLDAVINVQAFGWRLPLRVFPWQLLQLMGLALLATLLASAWPLYSLY RTQPADLLRTFAHED
Sequences:
>Translated_815_residues MALLSHWRRHPVQFFSVLTGLWLATSLLTGVEALNSQARDSYARASQLIGGEPQASLSTPNGATFPQQWFIDLRRQGWPV SPMLQGRLILKGHENQRLQLMGIEPVSLPGDSAVAGQAMPIERIVEFFSPPGSTWISPETLRALNLAEGATPATETGQTL PPLRAQTDMAPGVLLVDIGVAQRVLEQSDQLSRLLLPKDFHADVPAAFKGQLQLKSSGEENNLARLTESFHLNLDALGFL SFIVGLFIVHAAIGLALEQRRGLLRTLRACGVSARMLIACLIVELGALALIGGLFGVVSGYWLASVLLPDVAASLRGLYG AEVAGQLRLSPWWWFSGIGLSLLGALLAGANSLLRAARLPLLAVADPQAWHQQHARWLRRQGWVAGICAVIALAALVWGN SLGSGFVLMAGLLLGAALALPVLLSALLNGLLGRSRSVLGQWFLADCRQQLPALSLALMALLLAMAANIGAGSMTAGFRQ TFNDWLEQRLTAELYLNPSNPAQARELYTWLKQQANVTAIMPNWQVSVTLQGWPADVFGIIDHPHYRQHWPLLESRGDDP WAALAKDDAVMLSEQLARRLKVTPGDHLSIPTPGGSWSPRIVGIYADYGNPKGHVLVNSNHLLRGWPQLTPNRFNLRIDP PNIPALLTALQARFQLDDSRIVDQARLKGWSVQVFERTFAATAALNSLTLAVAGVALFISLLTQSQSRLGQLAPLWALGV TRRQLMLLNLGETWLLALLTLVLALPLGIGLAWCLDAVINVQAFGWRLPLRVFPWQLLQLMGLALLATLLASAWPLYSLY RTQPADLLRTFAHED >Mature_814_residues ALLSHWRRHPVQFFSVLTGLWLATSLLTGVEALNSQARDSYARASQLIGGEPQASLSTPNGATFPQQWFIDLRRQGWPVS PMLQGRLILKGHENQRLQLMGIEPVSLPGDSAVAGQAMPIERIVEFFSPPGSTWISPETLRALNLAEGATPATETGQTLP PLRAQTDMAPGVLLVDIGVAQRVLEQSDQLSRLLLPKDFHADVPAAFKGQLQLKSSGEENNLARLTESFHLNLDALGFLS FIVGLFIVHAAIGLALEQRRGLLRTLRACGVSARMLIACLIVELGALALIGGLFGVVSGYWLASVLLPDVAASLRGLYGA EVAGQLRLSPWWWFSGIGLSLLGALLAGANSLLRAARLPLLAVADPQAWHQQHARWLRRQGWVAGICAVIALAALVWGNS LGSGFVLMAGLLLGAALALPVLLSALLNGLLGRSRSVLGQWFLADCRQQLPALSLALMALLLAMAANIGAGSMTAGFRQT FNDWLEQRLTAELYLNPSNPAQARELYTWLKQQANVTAIMPNWQVSVTLQGWPADVFGIIDHPHYRQHWPLLESRGDDPW AALAKDDAVMLSEQLARRLKVTPGDHLSIPTPGGSWSPRIVGIYADYGNPKGHVLVNSNHLLRGWPQLTPNRFNLRIDPP NIPALLTALQARFQLDDSRIVDQARLKGWSVQVFERTFAATAALNSLTLAVAGVALFISLLTQSQSRLGQLAPLWALGVT RRQLMLLNLGETWLLALLTLVLALPLGIGLAWCLDAVINVQAFGWRLPLRVFPWQLLQLMGLALLATLLASAWPLYSLYR TQPADLLRTFAHED
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88747; Mature: 88615
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLSHWRRHPVQFFSVLTGLWLATSLLTGVEALNSQARDSYARASQLIGGEPQASLSTP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC NGATFPQQWFIDLRRQGWPVSPMLQGRLILKGHENQRLQLMGIEPVSLPGDSAVAGQAMP CCCCCCHHHHHHHHHCCCCCCHHHCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC IERIVEFFSPPGSTWISPETLRALNLAEGATPATETGQTLPPLRAQTDMAPGVLLVDIGV HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH AQRVLEQSDQLSRLLLPKDFHADVPAAFKGQLQLKSSGEENNLARLTESFHLNLDALGFL HHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHH SFIVGLFIVHAAIGLALEQRRGLLRTLRACGVSARMLIACLIVELGALALIGGLFGVVSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YWLASVLLPDVAASLRGLYGAEVAGQLRLSPWWWFSGIGLSLLGALLAGANSLLRAARLP HHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCC LLAVADPQAWHQQHARWLRRQGWVAGICAVIALAALVWGNSLGSGFVLMAGLLLGAALAL EEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH PVLLSALLNGLLGRSRSVLGQWFLADCRQQLPALSLALMALLLAMAANIGAGSMTAGFRQ HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH TFNDWLEQRLTAELYLNPSNPAQARELYTWLKQQANVTAIMPNWQVSVTLQGWPADVFGI HHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHH IDHPHYRQHWPLLESRGDDPWAALAKDDAVMLSEQLARRLKVTPGDHLSIPTPGGSWSPR CCCCCCHHCCCHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCE IVGIYADYGNPKGHVLVNSNHLLRGWPQLTPNRFNLRIDPPNIPALLTALQARFQLDDSR EEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHH IVDQARLKGWSVQVFERTFAATAALNSLTLAVAGVALFISLLTQSQSRLGQLAPLWALGV HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRRQLMLLNLGETWLLALLTLVLALPLGIGLAWCLDAVINVQAFGWRLPLRVFPWQLLQL HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCHHHCCHHHHHH MGLALLATLLASAWPLYSLYRTQPADLLRTFAHED HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC >Mature Secondary Structure ALLSHWRRHPVQFFSVLTGLWLATSLLTGVEALNSQARDSYARASQLIGGEPQASLSTP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC NGATFPQQWFIDLRRQGWPVSPMLQGRLILKGHENQRLQLMGIEPVSLPGDSAVAGQAMP CCCCCCHHHHHHHHHCCCCCCHHHCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC IERIVEFFSPPGSTWISPETLRALNLAEGATPATETGQTLPPLRAQTDMAPGVLLVDIGV HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH AQRVLEQSDQLSRLLLPKDFHADVPAAFKGQLQLKSSGEENNLARLTESFHLNLDALGFL HHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHH SFIVGLFIVHAAIGLALEQRRGLLRTLRACGVSARMLIACLIVELGALALIGGLFGVVSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YWLASVLLPDVAASLRGLYGAEVAGQLRLSPWWWFSGIGLSLLGALLAGANSLLRAARLP HHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCC LLAVADPQAWHQQHARWLRRQGWVAGICAVIALAALVWGNSLGSGFVLMAGLLLGAALAL EEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH PVLLSALLNGLLGRSRSVLGQWFLADCRQQLPALSLALMALLLAMAANIGAGSMTAGFRQ HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH TFNDWLEQRLTAELYLNPSNPAQARELYTWLKQQANVTAIMPNWQVSVTLQGWPADVFGI HHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHH IDHPHYRQHWPLLESRGDDPWAALAKDDAVMLSEQLARRLKVTPGDHLSIPTPGGSWSPR CCCCCCHHCCCHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCE IVGIYADYGNPKGHVLVNSNHLLRGWPQLTPNRFNLRIDPPNIPALLTALQARFQLDDSR EEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHH IVDQARLKGWSVQVFERTFAATAALNSLTLAVAGVALFISLLTQSQSRLGQLAPLWALGV HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRRQLMLLNLGETWLLALLTLVLALPLGIGLAWCLDAVINVQAFGWRLPLRVFPWQLLQL HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCHHHCCHHHHHH MGLALLATLLASAWPLYSLYRTQPADLLRTFAHED HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA